Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02198 ATGGGGAGGGCTCCTTGCTGCGACAAAGCAAACGTGAAGAAAGGCCCATGGTCTCCAGAAGAAGATGCAAAGCTCAAATCTTACATGGAGCAGCATGGCACTGGTGGCAACTGGATTGCTTTGCCTCAGAAGATCGGCCTTAAAAGATGTGGTAAGAGTTGTCGTCTTAGGTGGCTAAACTATCTTCGCCCTAATATCAAGCATGGCGGCTTCTCCGAAGAAGAAGATAACATTATTTGCAGTCTATACATCAGTATTGGAAGCAGGTGGTCGGTCATCGCAGCCCAATTGCCCGGAAGAACTGATAATGATATAAAGAACTACTGGAATACAAGGCTGAAGAAGAAGCTTCTAGGTAAGCACCGCAAAGAACAACAGGCACGTAGAGGAGGCAACAGTACTAGTGTTAAGCAGTTGGAAGCCAATAAAGGAATCGCAGTTTCCATTGCTCCCGTTGACAGTTCTTATCAACAGCCATATTGGCCAGAGATCCCCTTGCTAACACCTTTGCCATACTCAAACCAAGCCCCGTGCTTCAACGACCATGATTCTATCAGAAGATTACTAATCAAGCTCGGAGGGAGATTTTCTGACGATGACTATCAGCCCACACCAATCCACGATGGCttgaatattcaattttcCGATGCTACCGCTACTGCTATTACCTCCACACAACAGATTTATGAAGATCAAGCAAAAAATATGCGGtcttctgcttctgctgctTGCATGAATAATGTTGCAATTAACAACAACCAAGCACAATTTGCGCACACCCAGTACTGTGGAGGAGTTGATTTGGTGCAAGGACAAGGCAGTTTCAGCTCAACACTAGTTGAGGAAATGGTATCTAGTTATCCACAAAGATTAGATGGGCTGGAGTTTTTCTATGGGGTGGACATGGCCAATGATAAGGTAGGGTTAATAGATCCTAATAGTGCGAGCTGGGGGGACACCAATAACTCTCTCGTTTACCCTCCTCCTGTTGCTTCCAATTACCAAGATATACCACAATATTTCCAGGAGTTCAGGAGTAATTTTCTAAGGCAACTGCTGGAATTAGAGGCACTTGCTACGGCGCCGTA 1088 0.4412 MGRAPCCDKANVKKGPWSPEEDAKLKSYMEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKEQQARRGGNSTSVKQLEANKGIAVSIAPVDSSYQQPYWPEIPLLTPLPYSNQAPCFNDHDSIRRLLIKLGGRFSDDDYQPTPIHDGLNIQFSDATATAITSTQQIYEDQAKNMRSSASAACMNNVAINNNQAQFAHTQYCGGVDLVQGQGSFSSTLVEEMVSSYPQRLDGLEFFYGVDMANDKVGLIDPNSASWGDTNNSLVYPPPVASNYQDIPQYFQEFRSNFLRQLLELEALATAP 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02198 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Bva06g02198 362 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Bva06g02198 362 CDD SANT 71 113 IPR001005 -
Bva06g02198 362 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Bva06g02198 362 Gene3D - 7 68 - -
Bva06g02198 362 CDD SANT 16 62 IPR001005 -
Bva06g02198 362 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Bva06g02198 362 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Bva06g02198 362 PANTHER OS09G0431300 PROTEIN 1 340 - -
Bva06g02198 362 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 1 340 - -
Bva06g02198 362 Gene3D - 70 143 - -
Bva06g02198 362 SMART sant 67 115 IPR001005 -
Bva06g02198 362 SMART sant 13 64 IPR001005 -
Bva06g02198 362 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Bva06g02198 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02198 Bva-Chr6 14411882 14413648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02198 1 297 MYB Transcription Factor Family AT3G49690 49.682 1.16e-86 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva06g02198 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02198 K09422 - gmx:778079 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00601 10 5345411 5346739 Bva06g02198 06 14411882 14413648 BWGD
Bva06g02198 06 14411882 14413648 Bva06g02198 06 14411882 14413648 ECH