Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03946 ATGGAGATGGAGGAATACCCTAATAATAATAATAATAACTTGAGGCAAGAAAAGAGAGGTGCAAATGCAATAAGGCCAAGTTTCTTGTACTCATCAACTACTAATACTGCTTCTCTTCATAATCATCATCATCATCACCACCAAGTTCCAATCAACACCTTTAATCTTCAATCTTCAGATCATCATCATCAACAATGTTTTGAATCTGATGATAATCATCAAGTTCTTGTTGTGAAGACTGAAGCAATTAGCACCACCCCACATCATCACTATCCTTTGTTGAGGGGAAACAATAATAATATGCATCATCCCCACCATAGCCAGCAACACCATCATCATCATCAACAAGGACGGAATTACAACCAAACCTCCAATAATGGTGGTGGTGAAGTTGATGCCATCAAAGCCAAAATCATTGCTCATCCTCACTACTCTAATCTCTTAGAAGCTTACATGGATTGCCAAAAGGTCGGAGCTCCGCCGGAAGTGGTGGCGCGACTGGTGGCGGCGAGGCAGGAATTTGAGGCACGGCAACGATCTTCAGTTAGCTCAAGGGAAAGTTCCAATAAGGACCCAGAACTTGACCAATTCATGGAAGCTTACTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCTATAGAAGAGGCTATGGATTTCATGAGAAGAATAGAAACACAGCTAAATATGCTTTGCAATGGACCCGTTAGGATCTTCCAAGAGGGAGATACAGAAGTAGCAGAGATTGATCCAAGAGCTGAAGACCGTGAACTGAAGAACCATTTGCTTAGAAAATATAGTGGTTACTTGAGTAGCCTTAAGCAAGAACTCTCCAAGAAGAAGAAGAAAGGAAAACTCCCTAAGGATGCTAGGCAGAAGCTCCTTAACTGGTGGGAACTTCATTACAAATGGCCTTATCCTTCGGAATCAGAGAAGGTGGCACTAGCAGAATCAACAGGTTTGGACCAAAAGCAAATTAACAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAACCCTCTGAAGACATGCAGTTCATGGTGATGGATGGCCTTCATGCTCATCAGAAACAAACCCTCTATATGGATCCTCATTACTTGCCTGATCCTCACTACCGTCTAGCTCCATGA 1137 0.4213 MEMEEYPNNNNNNLRQEKRGANAIRPSFLYSSTTNTASLHNHHHHHHQVPINTFNLQSSDHHHQQCFESDDNHQVLVVKTEAISTTPHHHYPLLRGNNNNMHHPHHSQQHHHHHQQGRNYNQTSNNGGGEVDAIKAKIIAHPHYSNLLEAYMDCQKVGAPPEVVARLVAARQEFEARQRSSVSSRESSNKDPELDQFMEAYYDMLVKYREELTRPIEEAMDFMRRIETQLNMLCNGPVRIFQDEKCEGEGGGSSEEEQEGDTEVAEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHAHQKQTLYMDPHYLPDPHYRLAP 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03946 394 CDD homeodomain 307 359 IPR001356 GO:0003677
Arst6g03946 394 SUPERFAMILY Homeodomain-like 296 369 IPR009057 -
Arst6g03946 394 FunFam Homeobox protein knotted-1-like 2 300 362 - -
Arst6g03946 394 SMART KNOX2_2 184 235 IPR005541 GO:0003677|GO:0005634
Arst6g03946 394 SMART ELK_2 275 296 IPR005539 GO:0003677
Arst6g03946 394 Pfam ELK domain 275 296 IPR005539 GO:0003677
Arst6g03946 394 SMART KNOX1_2 132 176 IPR005540 GO:0003677|GO:0005634
Arst6g03946 394 MobiDBLite consensus disorder prediction 95 129 - -
Arst6g03946 394 Pfam KNOX1 domain 133 175 IPR005540 GO:0003677|GO:0005634
Arst6g03946 394 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 104 365 - -
Arst6g03946 394 ProSitePatterns 'Homeobox' domain signature. 333 356 IPR017970 GO:0000981|GO:0006355
Arst6g03946 394 Pfam KNOX2 domain 189 234 IPR005541 GO:0003677|GO:0005634
Arst6g03946 394 Pfam Homeobox KN domain 315 354 IPR008422 GO:0003677|GO:0006355
Arst6g03946 394 ProSiteProfiles 'Homeobox' domain profile. 295 358 IPR001356 GO:0003677
Arst6g03946 394 Gene3D - 300 362 - -
Arst6g03946 394 ProSiteProfiles ELK domain profile. 275 295 IPR005539 GO:0003677
Arst6g03946 394 SMART HOX_1 297 362 IPR001356 GO:0003677
Arst6g03946 394 MobiDBLite consensus disorder prediction 244 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03946 Arst-Chr6 107751803 107761831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03946 64 394 Homeobox Transcription Factor Family AT4G08150 64.602 3.40e-142 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Arst6g03946 KNOX2 5.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g03946 - - gmx:100800822 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g03946 6 107751803 107761831 Arst6g03946 6 107751803 107761831 ECH