Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1920 ATGTCTAGTTTTGTGGGCGTTCTTGTTTCTGATCAATGGCTACAGAGCCAGTTCACTCAAGTCGAACTTCGAACCCTCAAATCCAAGTATGTATCGGAGAGGACTCAATCAGGACATGTTACTGTCGGAAACTTGCCCTCCATTTTTAAGAAATTGAAGCCTTTCGCTGAGCTGTTCACCGAGGATGAGATTAAGGATATTTTGGCAGAGTCATATCAGGACGTGGGTGAAGAAATTGATTTTGAATCCTTTTTGAGGGCACATTTAAATCTACAAGCCCGAGCAACGGCAAAAGATGGTGGTTCAAAAAGTTCTTCTTCATTTTTGAAGGCAGCAACAACAACTGTTCATCATGCTATTAATGAATCTGAGAAAGCTTCTTATGTTGCGCATATTAACAGCTACTTGGCTGAAGATAAATTCATGAGTCAGTTTCTTCCGATTGATCCATCAACTGATGCTTTGTTTGATCTTGCAAAAGATGGAGTCCTTCTCTGCAAGCTTATTAATGTTGCTGTTCCTGGGACCATAGATGACCGAGCTATTAACACTAAACGGGTTCTTAATCCATGGGAAAGGAATGAGAACCACACCCTTGGCCTCAATTCAGCCAAGGCAATTGGGTGCACAGTGGTTAATATCGGTACACAGGATTTAGTTGAAGGAAGACCACATCTGGTACTTGGTCTGATTTCACAAATAATCAAGATTCAATTGTTAGCTGATCTCAATCTGAAGAAAACTCCTCAACTTGTGGAATTAGTGGAAGACGACAAGGATGTGGAGGAGCTTATCAGTTTACCACCTGAAAAGGTTTTACTGAAATGGATGAACTTCCACCTGAAGAAAGCTGGATATGAGAAACAAGTTACCAACTTCTCTTCTGACGTAAAGGATGGAGAGGCTTATGCTTACTTGCTTAATGCTCTTGCCCCAGAAGTTGCAGGCCCAGCCCTAGCCACAAGTGATCCAACAGAACGGGCAAGCATGGTTCTTGAGCAGGCAGAGAAATTAGATTGCAAGAGATACCTCACTCCAAAGGACATAGTGGAGGGGTCACCTAATCTTAATCTTGCATTTGTTGCTCAAATTTTCCAGCATAGGAATGGCCTTACAGTTGACAGCAAGAAAATGTGCTTTGCTGAGATGATGACTGATGATGTTCAGACATCTCGGGAAGAAAGATGCTTCAGACTGTGGATTAACAGTCTTGGAATTGCCACTTATGTCAATAATGTTTTTGAGGATGTCAGAAATGGATGGGTTCTATTAGAAGTTCTTGATAAGGTTTCAGCTGGATCTGTCAATTGGAAGCTGGCAACAAAGCCCCCTATAAAGATGCCGTTTCGAAAAGTTGAGAACTGCAACCAAGTTATAAAGATTGGGAAGGACCTCAACTTTTCCTTGGTAAATGTTGCTGGTAATGATATTGTACAAGGAAATAAGAAGCTCTTGTTGGCATTTTTGTGGCAGCTGATGAGGTTTACTATGCTTCAACTTCTGAAAAACTTGAGATCACACTCCCAAGGTAAAGAGATTACTGATGCTGATATTCTGAACTGGGCAAACAATAAAGTGAAGAGAGCAGGAAGAACTTCCCAAATGGAGAGTTTCAAGGATAAGAATCTTTCTAATGGCGTTTTCTTCCTTGAGCTTTTGAGTTCTGTGGAGCCAAGGGTCGTCAATTGGAGTCTCGTTACTAAAGGGGAGACTGATGAAGATAAGAAGCTGAATGCAACATATATAATCAGTGTTGCCCGAAAACTAGGGTGTTCCATTTTCCTGTTACCTGAGGACATAATAGAGGTCAACCAGAAGATGATACTTATTTTAACTGCTAGCATCATGTATTGGAGCCTGCAGAAACCTGAAGAACATGTCACCTCTGAAGCATCGCCTGTATCTGCAGTAGAAGGTGAAAACGAAGCAGAGGTAATTAACGACGAGGTAGCCAATTTGACCATTGATGATACTGCTTCCGAGAATGCCAGCTCTTCTTAA 2001 0.4153 MSSFVGVLVSDQWLQSQFTQVELRTLKSKYVSERTQSGHVTVGNLPSIFKKLKPFAELFTEDEIKDILAESYQDVGEEIDFESFLRAHLNLQARATAKDGGSKSSSSFLKAATTTVHHAINESEKASYVAHINSYLAEDKFMSQFLPIDPSTDALFDLAKDGVLLCKLINVAVPGTIDDRAINTKRVLNPWERNENHTLGLNSAKAIGCTVVNIGTQDLVEGRPHLVLGLISQIIKIQLLADLNLKKTPQLVELVEDDKDVEELISLPPEKVLLKWMNFHLKKAGYEKQVTNFSSDVKDGEAYAYLLNALAPEVAGPALATSDPTERASMVLEQAEKLDCKRYLTPKDIVEGSPNLNLAFVAQIFQHRNGLTVDSKKMCFAEMMTDDVQTSREERCFRLWINSLGIATYVNNVFEDVRNGWVLLEVLDKVSAGSVNWKLATKPPIKMPFRKVENCNQVIKIGKDLNFSLVNVAGNDIVQGNKKLLLAFLWQLMRFTMLQLLKNLRSHSQGKEITDADILNWANNKVKRAGRTSQMESFKDKNLSNGVFFLELLSSVEPRVVNWSLVTKGETDEDKKLNATYIISVARKLGCSIFLLPEDIIEVNQKMILILTASIMYWSLQKPEEHVTSEASPVSAVEGENEAEVINDEVANLTIDDTASENASSS* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1920 666 CDD CH 392 494 IPR001715 GO:0005515
Apr9g1920 666 Pfam Calponin homology (CH) domain 145 237 IPR001715 GO:0005515
Apr9g1920 666 Pfam Calponin homology (CH) domain 393 495 IPR001715 GO:0005515
Apr9g1920 666 Pfam Calponin homology (CH) domain 515 616 IPR001715 GO:0005515
Apr9g1920 666 Pfam Calponin homology (CH) domain 268 368 IPR001715 GO:0005515
Apr9g1920 666 PANTHER FIMBRIN-4-LIKE 1 665 - -
Apr9g1920 666 CDD CH 123 237 IPR001715 GO:0005515
Apr9g1920 666 ProSiteProfiles Calponin homology (CH) domain profile. 122 239 IPR001715 GO:0005515
Apr9g1920 666 SMART ch_5 269 367 IPR001715 GO:0005515
Apr9g1920 666 SMART ch_5 514 618 IPR001715 GO:0005515
Apr9g1920 666 SMART ch_5 124 237 IPR001715 GO:0005515
Apr9g1920 666 SMART ch_5 393 495 IPR001715 GO:0005515
Apr9g1920 666 Gene3D - 387 504 IPR036872 -
Apr9g1920 666 CDD CH 268 367 IPR001715 GO:0005515
Apr9g1920 666 ProSiteProfiles Calponin homology (CH) domain profile. 512 620 IPR001715 GO:0005515
Apr9g1920 666 ProSitePatterns Actinin-type actin-binding domain signature 2. 211 235 IPR001589 -
Apr9g1920 666 ProSiteProfiles Calponin homology (CH) domain profile. 391 497 IPR001715 GO:0005515
Apr9g1920 666 SUPERFAMILY Calponin-homology domain, CH-domain 120 617 IPR036872 -
Apr9g1920 666 Gene3D - 118 244 IPR036872 -
Apr9g1920 666 PANTHER FIMBRIN/PLASTIN 1 665 IPR039959 GO:0051015|GO:0051017
Apr9g1920 666 Gene3D - 505 617 IPR036872 -
Apr9g1920 666 ProSiteProfiles Calponin homology (CH) domain profile. 267 369 IPR001715 GO:0005515
Apr9g1920 666 Gene3D - 245 372 IPR036872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1920 Apr-Chr9 27723337 27730176 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1920 1 657 EF-hand Containing Proteins AT5G55400 67.591 0.0 947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1920 9 27723337 27730176 Apr9g1920 9 27723337 27730176 ECH