Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr9g0361 | ATGGCATTTGCAGGAACAACCCAAAAGTGTATGGCCTGTGACAAAACTGTTTATCTGGTTGATAAGTTGACTGCGGATAACCGAGTGTTCCACAAAGCTTGCTTCAGATGCCACCACTGCAAAGGAACCCTGAAGCTTAGCAACTATAACTCTTTTGAGGGAGTTCTTTATTGCAAGCCACACTTCGATCAACTGTTCAAAAGAACTGGTAGCCTTGACAAAAGCTTCGAAGGGACACCAAAAATTGCCAAACCAGAAAAAAATATGGATGAGAAACCTGCAGCAGCCAAAGTCTCAAGTATGTTTGGTGGAACAAGGGATAAATGTGCTGGTTGTCAGAAAACGGTGTATCCCACTGAGAAGGTTACTGTTAATGGAACTCCTTACCATAAGAGCTGTTTCAAATGCTGCCATGGAGGGTGTGTTATCAGTCCCTCCAATTACATAGCACACGAGGGAAAACTCTACTGCAAACACCACCATATCCAATTGATCAAGGAGAAGGGCAATTTAAGCCAGCTGGAAGGAGACAATGAGAAGAGTTCAATGCAGGGAAAAATCAATGGTGAAGAAGTTGCTGCGGAGACATGA | 591 | 0.4349 | MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLDKSFEGTPKIAKPEKNMDEKPAAAKVSSMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDNEKSSMQGKINGEEVAAET* | 197 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr9g0361 | 196 | MobiDBLite | consensus disorder prediction | 174 | 196 | - | - | |
| Apr9g0361 | 196 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
| Apr9g0361 | 196 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 135 | 174 | - | - | |
| Apr9g0361 | 196 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Apr9g0361 | 196 | ProSiteProfiles | LIM domain profile. | 107 | 167 | IPR001781 | - | |
| Apr9g0361 | 196 | CDD | LIM2_SF3 | 109 | 169 | - | - | |
| Apr9g0361 | 196 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 101 | 134 | - | - | |
| Apr9g0361 | 196 | Pfam | LIM domain | 109 | 163 | IPR001781 | - | |
| Apr9g0361 | 196 | Pfam | LIM domain | 10 | 64 | IPR001781 | - | |
| Apr9g0361 | 196 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Apr9g0361 | 196 | PANTHER | GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN | 1 | 182 | - | - | |
| Apr9g0361 | 196 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Apr9g0361 | 196 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
| Apr9g0361 | 196 | Gene3D | Cysteine Rich Protein | 104 | 173 | - | - | |
| Apr9g0361 | 196 | Gene3D | Cysteine Rich Protein | 4 | 74 | - | - | |
| Apr9g0361 | 196 | PANTHER | OS06G0237300 PROTEIN | 1 | 182 | IPR045268 | GO:0051015 | |
| Apr9g0361 | 196 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Apr9g0361 | 196 | SMART | lim_4 | 108 | 160 | IPR001781 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr9g0361 | Apr-Chr9 | 4820552 | 4821940 | Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Apr9g0361 | LIM | 1.5e-12 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr9g0361 | K09377 | - | gmx:100499947 | 409.453 |
Event-related genes