Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0354 ATGGCGGTGTTGTCAGACATTAAAGACAACGATGAACTCAACGAAGAGCCCGGGGAAGTCATCGAATCGGCACCACCCCAGAAAGTTGGCGAAGAGAGGCAGCTCACTGGTCTCAAGAAGAAGCTTCTCAAATGCGGACTCGAATGGGAAACCCCCAACTTCAACGACCAAGTCACTGTTCACTATGTTGCAACTTCTTTGGATGGAACGAAGTTTGATTCCACTAGGGACATCGATCAACCTAGGACGTTTACTCTTGGTCAAGGGGAAGTGTTTGCTGGGTTGGATAATGGGATTTTGACTATGAACAAGGGGGAGATAGCATTGTTCACGTTACCTGGTGTGTCTGGTGGTGGAGGCATTGCAGATAATTCCAACTCGGTTGTGCAGTTTGAGGTGGAACTTGTTTCGTGGATCACAGTGGTGGATGTTTGCAAAGATGGCGGGGTTCTTAAAAAAATTATGGCGAAGGGGAGTGGGAATGAGAGACCTAGTGATCTTGATGAAGTGCTTGTGAAGTACCAGGTGATGCTGGTTGATGGCACTGTTGTTGCGGAAACGCCGGAAGGAGGAGTTGAATTTCATGTGAAGTATGGTCATATTTTTTCTATATTGCCGAAAGTGATCATGACTATGACAAGGGGAGAGAAGGCTGAATTAATTGTTCAACCTCAGTATGCCTATGGGGAGAAGGGGAGAGAAGCTGGGAGTGGGCTACATTCAATTCCTCCAAATTCAGTGTTGCATATTAATATTGAGTTGGTGTCCTTCAAGCCTGTCATAAATGTTACTGGTGACTCCATGGTGCTTAAGAAGATTTTGAAAGAAGGGGAGGGTGCTTTCACAGCCAATGAGGGTGCAAAAGTTACCGTCAGCTTCACAGCTATGCTAGAAGATGGCACTGTGTTTGAGAAAAGAGGAATCGATGAAACACAGCCCTTGGAATTCATAACTGATGAGGAACAAGTGATCACTGGTCTAGACCGAGCTGTGGCAACAATGAAGAAGGGTGAGAGAGCCATAATTAGCATACATCCTAATTATGCATTTGGAAATGTTGAAGTGAGACAAGATCTTGCTATTGTGCCACCAGGCTCAAATGTAATCTTTGACGTTGAGATGATGGATTTCATTAAGGAGAAAGCACCATGGGAATTAAATAGTAAGGAGAAAATTGAGGTGGCTGGGAGGAAGAAAGAAGAAGGAAATGTATTATTTAAAAGTGGAAATTATCAGCGAGCAAGAAAGAAGTATGAAAAGGCTGCTGATTTTGTTAGTGAAGATGGATCCTTTGGGGATGAAGAGCAAAAGCTAGCTGAGGCACTGAGAGTGTTGTGCTGGTTGAATGGTGCAGCGTGTTGCCTTAAACTTAATGACCTTCCTGGAGCAATCAAACTATGTTCACAGGTGCTTGATGTTGAATTTTGCAATGTGAAAGCTTTGTACAGACGAGCACAAGCGTATATTGAAACTGGAGACTTCCTTTTGGCAGATGTAGACATCAAGAAAGCTCTTGAGGTGGACCCACAAAACAGGGAGGTGATGATAATTAAAAAGAAATTGAAGCAACTTCAAGCTGACAGTGACAAAAAAGATGCTAAGTTATATGAACACATGTTTGCACGTAAAACAAAGGACTCATCTATGGCTAAAAAGAGACTGAAGGTTGAGAAACATGAGACGGAAAATGAAGAGGTTGCAGGAATGGAAATGGACAATGTTGCTGATAGCGCCATGGTTTAA 1743 0.4332 MAVLSDIKDNDELNEEPGEVIESAPPQKVGEERQLTGLKKKLLKCGLEWETPNFNDQVTVHYVATSLDGTKFDSTRDIDQPRTFTLGQGEVFAGLDNGILTMNKGEIALFTLPGVSGGGGIADNSNSVVQFEVELVSWITVVDVCKDGGVLKKIMAKGSGNERPSDLDEVLVKYQVMLVDGTVVAETPEGGVEFHVKYGHIFSILPKVIMTMTRGEKAELIVQPQYAYGEKGREAGSGLHSIPPNSVLHINIELVSFKPVINVTGDSMVLKKILKEGEGAFTANEGAKVTVSFTAMLEDGTVFEKRGIDETQPLEFITDEEQVITGLDRAVATMKKGERAIISIHPNYAFGNVEVRQDLAIVPPGSNVIFDVEMMDFIKEKAPWELNSKEKIEVAGRKKEEGNVLFKSGNYQRARKKYEKAADFVSEDGSFGDEEQKLAEALRVLCWLNGAACCLKLNDLPGAIKLCSQVLDVEFCNVKALYRRAQAYIETGDFLLADVDIKKALEVDPQNREVMIIKKKLKQLQADSDKKDAKLYEHMFARKTKDSSMAKKRLKVEKHETENEEVAGMEMDNVADSAMV* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0354 580 Gene3D - 260 380 IPR046357 GO:0003755
Apr9g0354 580 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 3 265 - -
Apr9g0354 580 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 269 377 - -
Apr9g0354 580 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 377 562 - -
Apr9g0354 580 MobiDBLite consensus disorder prediction 1 25 - -
Apr9g0354 580 Gene3D - 31 141 IPR046357 GO:0003755
Apr9g0354 580 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 51 136 IPR001179 GO:0003755
Apr9g0354 580 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 282 374 IPR001179 GO:0003755
Apr9g0354 580 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 162 255 IPR001179 GO:0003755
Apr9g0354 580 Gene3D Tetratricopeptide repeat domain 381 538 IPR011990 GO:0005515
Apr9g0354 580 Pfam Tetratricopeptide repeat 479 511 IPR019734 GO:0005515
Apr9g0354 580 SUPERFAMILY FKBP-like 143 258 - -
Apr9g0354 580 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 286 378 IPR001179 GO:0003755
Apr9g0354 580 SUPERFAMILY FKBP-like 8 140 - -
Apr9g0354 580 SMART tpr_5 395 428 IPR019734 GO:0005515
Apr9g0354 580 SMART tpr_5 444 477 IPR019734 GO:0005515
Apr9g0354 580 SMART tpr_5 478 511 IPR019734 GO:0005515
Apr9g0354 580 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 55 258 IPR001179 GO:0003755
Apr9g0354 580 Gene3D - 142 258 IPR046357 GO:0003755
Apr9g0354 580 ProSiteProfiles TPR repeat profile. 478 511 IPR019734 GO:0005515
Apr9g0354 580 SUPERFAMILY TPR-like 389 540 IPR011990 GO:0005515
Apr9g0354 580 SUPERFAMILY FKBP-like 264 395 - -
Apr9g0354 580 MobiDBLite consensus disorder prediction 557 580 - -
Apr9g0354 580 PANTHER PEPTIDYLPROLYL ISOMERASE 269 377 - -
Apr9g0354 580 PANTHER PEPTIDYLPROLYL ISOMERASE 3 265 - -
Apr9g0354 580 PANTHER PEPTIDYLPROLYL ISOMERASE 377 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0354 Apr-Chr9 4760066 4766290 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0354 28 542 Calmodulin-binding Proteins AT3G25230 54.894 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0354 K09571 - gmx:100798382 934.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0354 9 4760066 4766290 Apr9g0354 9 4760066 4766290 ECH