Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0346 ATGGCGAATAATTCTCAGCCCTCCAGTATGCAGTTTCGGCCAGTCATTCAAGCTCAACATGGGCAACCGTTTGTTCCGATGACTTCACAACAATTTGGACCGGCAGGACATGCTATTCCTTCTTCAAATATGGGAATGCCTGTTGTTCAGGGTCAGCAATTGCAGTATTCTCAACCAATGCAACAATTGAATCCGAGACCAATGCAGCCTGGTCATCCTGCTCCTTCATCACAAGCTATACCTATGCCTTATATTCAGACAAACAGGTCACTGACATCTGTACCTCCACATTCACAGCAGACTGTTCCCCCCTTAAGCAATCATATGCCTGGCTTGGCTGTTTCAGGAGCAGCTCCTCATTCTTCATACACTTTCACACCATCATATGGTCAGCAACAAGATAATGTGAATCCAATGGCTCAATACCAGCATCCACCTCAAATGCTGGCACCTTCTGCTGCACAACCTTGGTTGTCCTCTGTATCTCAGAGTGCTAGCGCTGTTACATCAGTGCCGCCAGCTGGAGTACAATCATCTAGTACTACATCAACTGATGCGGCAAGTAATGCTACTAGCCAGCCCTCTTTATCTGATTGGCAAGAGCATACTTCTGCTGATGGGAGAAGATATTACTACAATAAGAGGACAAGGCAATCAAGTTGGGAGAAACCTTTGGAATTGATGTCACCGATTGAGAGGGCAGATGCATCAACTGTTTGGAAAGAATTTACTTCTTCAGAAGGAAGAAAGTATTATTACAACAAGGTTACTCAGCAATCAACATGGTCAATACCAGAGGAACTTAAGTTGGCTCGGGAACAGGCACACAAAGCTGTTAACCAGGGGATGCAGTCTGAAACAAGTGATGCATCCAATGCTGCTGTGTCCTCTGCTGCTACATCAACAGCAGCTAATGCAGCTACCTTGAACACATCTTTGACATCAAATGCGCTTGCTTCCAGCCCATCTTCTGTCACACCAGTTGCAGCAACTGATTCTCAGCAGTCGGTTTCTGGGTTATCAGGGACCTCTGTTTCTTACTCTGTAGTTTCTTCAAGCACCACTGGAGTTGAACCAAGCACTGTGCCAACTATGAGCATGACACCTACAATAGTGGCAGGAAGCCCAGGAGTAGCTGCAAATTCACTTGATTCTAAAATGCCACCCACTGTTGAAAATCAAGCATCTCAGGATTTTGCTTCTGTCAATGGAGCTTCTTTTCAAGATAGTGAGGAAATGAATAGAGGATTGCCTGTGGTTGGTAAAAATAATGTGACTCCACCTGAGGAGAAAATCAATGATGATGAAAATTTGGTATATGCAAATAAGCTGGAAGCAAAAAATGCATTTAAAGCGCTTTTGGAATCTGTGAATGTTCAGTCTGATTGGACATGGGAACAGACAATGAGAGAAATCATCAATGACAAAAGATATAATGCCCTAAAAACACTTGGTGAGCGAAAACAAGCTTTTAATGTGTATTTGGGCCAAAGGAAGAAGCTAGAGGCCGAAGAGAGGCGCATGAAGCAGAAAAGAGCCCGTGAAGAATTCACAAAGATGTTGGAAGAGTGCAAGGAACTTACATCATCCATGAGATGGAGCAAAGCTATAAGCTTGTTTGAAAATGATGAACGATTCAATGCTGTTGAAAGACCAAGAGACCGGGAAGATTTATTTGAAAGCTACATGGTGGAACTTGAGAGAAAGGAAAAGGAAAATGCTGCAGAGGAACACCGGCGTAATATAGCACAATATAGGAAATTTCTGGAGTCCTGTGATTATGTGAAGGTGAATAGTCATTGGCGAAAAATCCAAGATCGATTAGAGGATGATGATAGATACTTGCGACTTGAAAAAATTGACCGCTTGCTAGTTTTCCAGGACTATATTCGGGACTTGGAGAAAGAAGAAGAGGAACAAAAAAGAATACAGAAGGATCGAATCCGTCGGGGTGAAAGGAAAAATCGTGATGCATTTCGCAAGTTGCTAGAAGAACATGTTGCTGCTGGAATTCTTAATGCTAAAACTCAATGGCGGGACTATTGCTTGAAGGTCAGGGATTTGCCTCAATATCAAGCTGTTGCATCAAATATATCTGGTTCCACCCCAAAAGATTTATTTGAGGATGTTGCTGAGGATCTTGAAAAACAGTATCATGGAGACAAGACACTCGTAAAAGATACAATTAAGTCAGGCAAGATCACGGTAGTGACTACTTCAGTATTTGAGGACTTTAAGGTAGCAGTCTTGGAAGAAGCTGCTTGCCAAACAATATCTGAGATCAATTTGAAGCTTATATTTGAAGAGTTGTTAGAGAGAGCTAAGGAAAAAGAAGAGAAAGAAGCTAAGAAGCGCCAACGCCTTGCGGATGACTTTACCAACCTGTTATATACATTCAAGGATATTACTACAACTTCAAAATGGGAGGATTGCAAGCCACTTTTTGAGGAGGCTCAAGAGTACAGGTCAATTGGGGATGAAAGCTATAGTAGAGAAATTTTTGAGGAATACATCACATACTTGAAGGAAAAAGCTAAAGAGAAGGAACGCAAGCGTGAAGAAGAAAAGGCCAAAAAGGAGAAAGAAAGAGAAGAGAAAGAGAAACGGAAGGAGAAGGAGAAGGAGAAAAAAGAAAAGGATAGAGAACGTGAAAAGGAGAAGTCTAAGGAACGTCATAAAAAGGATGAAACAGATAGTGATAATCAAGACATTACTGACAGCCATGGTTACAAGGAGGAGAAGAAAAAGGATAAGGAAAGGAAACATCGGAAAAGGCATCAGAGCAGTATAGAGGATGTGGATTCTGAGAAGGACGAGAAGGAAGAATCTAAAAAATCACGAAGGCATGGCAGTGAACGCAAAAAATCTAGGAAGCATGCAAACTCTCCTGAATCAGACAATGAAAGTCGGCATAGAAGACACAAGAGGGAGCACTGGGATGGTTCAGGGAAAATTGGGGGGCATGAGGAACTTGAAGACGGAGAGCTCGGCGATGATGGAGAGATCTAG 3009 0.4241 MANNSQPSSMQFRPVIQAQHGQPFVPMTSQQFGPAGHAIPSSNMGMPVVQGQQLQYSQPMQQLNPRPMQPGHPAPSSQAIPMPYIQTNRSLTSVPPHSQQTVPPLSNHMPGLAVSGAAPHSSYTFTPSYGQQQDNVNPMAQYQHPPQMLAPSAAQPWLSSVSQSASAVTSVPPAGVQSSSTTSTDAASNATSQPSLSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSSEGRKYYYNKVTQQSTWSIPEELKLAREQAHKAVNQGMQSETSDASNAAVSSAATSTAANAATLNTSLTSNALASSPSSVTPVAATDSQQSVSGLSGTSVSYSVVSSSTTGVEPSTVPTMSMTPTIVAGSPGVAANSLDSKMPPTVENQASQDFASVNGASFQDSEEMNRGLPVVGKNNVTPPEEKINDDENLVYANKLEAKNAFKALLESVNVQSDWTWEQTMREIINDKRYNALKTLGERKQAFNVYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSMRWSKAISLFENDERFNAVERPRDREDLFESYMVELERKEKENAAEEHRRNIAQYRKFLESCDYVKVNSHWRKIQDRLEDDDRYLRLEKIDRLLVFQDYIRDLEKEEEEQKRIQKDRIRRGERKNRDAFRKLLEEHVAAGILNAKTQWRDYCLKVRDLPQYQAVASNISGSTPKDLFEDVAEDLEKQYHGDKTLVKDTIKSGKITVVTTSVFEDFKVAVLEEAACQTISEINLKLIFEELLERAKEKEEKEAKKRQRLADDFTNLLYTFKDITTTSKWEDCKPLFEEAQEYRSIGDESYSREIFEEYITYLKEKAKEKERKREEEKAKKEKEREEKEKRKEKEKEKKEKDREREKEKSKERHKKDETDSDNQDITDSHGYKEEKKKDKERKHRKRHQSSIEDVDSEKDEKEESKKSRRHGSERKKSRKHANSPESDNESRHRRHKREHWDGSGKIGGHEELEDGELGDDGEI* 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0346 1002 Pfam WW domain 197 224 IPR001202 GO:0005515
Apr9g0346 1002 Pfam WW domain 240 265 IPR001202 GO:0005515
Apr9g0346 1002 ProSitePatterns WW/rsp5/WWP domain signature. 199 224 IPR001202 GO:0005515
Apr9g0346 1002 MobiDBLite consensus disorder prediction 848 1002 - -
Apr9g0346 1002 ProSiteProfiles FF domain profile. 578 632 IPR002713 -
Apr9g0346 1002 Pfam FF domain 512 562 IPR002713 -
Apr9g0346 1002 Pfam FF domain 654 709 IPR002713 -
Apr9g0346 1002 Pfam FF domain 581 629 IPR002713 -
Apr9g0346 1002 Pfam FF domain 790 837 IPR002713 -
Apr9g0346 1002 Pfam FF domain 445 492 IPR002713 -
Apr9g0346 1002 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 4 997 IPR039726 GO:0045292
Apr9g0346 1002 Coils Coil 767 791 - -
Apr9g0346 1002 ProSitePatterns WW/rsp5/WWP domain signature. 240 265 IPR001202 GO:0005515
Apr9g0346 1002 ProSiteProfiles FF domain profile. 443 497 IPR002713 -
Apr9g0346 1002 SUPERFAMILY WW domain 198 232 IPR036020 GO:0005515
Apr9g0346 1002 ProSiteProfiles FF domain profile. 650 713 IPR002713 -
Apr9g0346 1002 SUPERFAMILY FF domain 434 497 IPR036517 -
Apr9g0346 1002 Coils Coil 838 892 - -
Apr9g0346 1002 MobiDBLite consensus disorder prediction 169 201 - -
Apr9g0346 1002 Coils Coil 559 588 - -
Apr9g0346 1002 Coils Coil 923 943 - -
Apr9g0346 1002 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 4 997 - -
Apr9g0346 1002 Gene3D FF domain 499 573 IPR036517 -
Apr9g0346 1002 Gene3D FF domain 574 641 IPR036517 -
Apr9g0346 1002 Gene3D FF domain 642 722 IPR036517 -
Apr9g0346 1002 Coils Coil 626 646 - -
Apr9g0346 1002 SMART ww_5 194 226 IPR001202 GO:0005515
Apr9g0346 1002 SMART ww_5 235 267 IPR001202 GO:0005515
Apr9g0346 1002 MobiDBLite consensus disorder prediction 924 948 - -
Apr9g0346 1002 SUPERFAMILY WW domain 227 268 IPR036020 GO:0005515
Apr9g0346 1002 SUPERFAMILY FF domain 645 719 IPR036517 -
Apr9g0346 1002 CDD WW 197 226 IPR001202 GO:0005515
Apr9g0346 1002 Gene3D FF domain 443 498 IPR036517 -
Apr9g0346 1002 SUPERFAMILY FF domain 570 639 IPR036517 -
Apr9g0346 1002 SMART FF_2 578 632 IPR002713 -
Apr9g0346 1002 SMART FF_2 785 840 IPR002713 -
Apr9g0346 1002 SMART FF_2 510 565 IPR002713 -
Apr9g0346 1002 SMART FF_2 443 497 IPR002713 -
Apr9g0346 1002 SMART FF_2 652 713 IPR002713 -
Apr9g0346 1002 MobiDBLite consensus disorder prediction 112 143 - -
Apr9g0346 1002 MobiDBLite consensus disorder prediction 119 142 - -
Apr9g0346 1002 MobiDBLite consensus disorder prediction 848 916 - -
Apr9g0346 1002 Gene3D - 233 292 - -
Apr9g0346 1002 Gene3D - 178 232 - -
Apr9g0346 1002 ProSiteProfiles WW/rsp5/WWP domain profile. 193 226 IPR001202 GO:0005515
Apr9g0346 1002 ProSiteProfiles FF domain profile. 510 565 IPR002713 -
Apr9g0346 1002 Gene3D FF domain 780 853 IPR036517 -
Apr9g0346 1002 ProSiteProfiles WW/rsp5/WWP domain profile. 234 267 IPR001202 GO:0005515
Apr9g0346 1002 Coils Coil 494 514 - -
Apr9g0346 1002 SUPERFAMILY FF domain 786 847 IPR036517 -
Apr9g0346 1002 MobiDBLite consensus disorder prediction 957 991 - -
Apr9g0346 1002 MobiDBLite consensus disorder prediction 169 202 - -
Apr9g0346 1002 SUPERFAMILY FF domain 504 572 IPR036517 -
Apr9g0346 1002 CDD WW 240 267 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0346 Apr-Chr9 4646144 4660519 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0346 K12821 - gmx:100806019 1440.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0346 9 4646144 4660519 Apr9g0346 9 4646144 4660519 ECH