LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr9g0340	ATGTGCTTTGGTGTTGGGGAGAACAGTGCTTTTCACTCTCCTTTGGCCATGATGCCACTTAAGTCTGATGGGTCACTTTGCATAATGGAAGCTCTTAGCAGGTCACAAACCCAAGTTATGGTGCCAACTTCTTCTCCAAAACTTGAGGACTTTCTTGGTGGTGCAACTATGGGAGCTCAAGATTATGGAGGCCATGAAAGAGAGGCAATGGCTCTAAGTCTCGATAGCATCTACTACAACAGTCAAAATATAGAACCTCAAGCCAACAGAGACCATTCTTCATCCTTGGACCTTCTTTCTGATCCCTTCAGGCATCAACAATCCCATCCATATTACTCAGGACTTGCGTGCCATGGCATATATCAGGCACCATTAGAGGAAGAAACCAAGCAATCCCATGTCACGGTTTGCAGCTCCCAAATGCCTCAAGTGGTGGAAGAAGGCATTGCTTGCTTCAAAAACTGGGTGCCCCCAAGAGAGTATTCTTCTTCTCTTGAGCAGCATCAAGTGAATAGTAGTACTCTGGGGGATAATGATCATGGTGCTTCTGGGTCAGTTGGTGTTGGCACAGTAGGTTGTGGGGACTTGCAGCCTTTAAGCTTATCTATGAGCCCTGGTTCTCAGTCAAGTTGTGTCACTGTTCCAACTCAGATCTCACCATCTGGAACTGACTCTGTGACTGTGGATGCCAAAAAGAGAGGACCTGCTAAGCTTGGTCAGAAGCAACCTGTGCATAGGAAATCCATTGACACATTTGGGCAAAGAACTTCTCAGTATAGAGGTGTGACAAGGCATAGATGGACTGGTAGATATGAGGCGCATTTGTGGGATAACAGTTGCAAGAAGGAAGGGCAAACCAGGAAAGGAAGACAAGTTTATTTGGGTGGTTATGATATGGAAGAGAAAGCTGCAAGAGCCTATGATCTTGCGGCTCTGAAGTATTGGGGACCCTCAACGCACATAAACTTCCCGCTTGAGAACTACCAAGCTGAACTTGAAGAAATGAAGAACATGAGCAGGCAGGAATACGTGGCACACTTAAGAAGAAAGAGTAGTGGGTTTTCAAGGGGTGCCTCAATGTATAGAGGGGTGACAAGGCACCACCAACATGGCAGATGGCAAGCAAGGATAGGCAGAGTTGCAGGAAATAAAGACCTTTATCTAGGGACATTCAGCACTCAAGAGGAAGCAGCTGAAGCATATGATGTAGCAGCAATCAAGTTTCGTGGGGTAAATGCAGTGACCAACTTCGACATATCTAGATACGATGTTGAAAGAATCATGGCCAGCAATACCTTGCTAGCTGGAGAATTGGCAAGAAGAAACAAGGAAAGTGAACCAAGAACCGAGGCCATAGAGTACAATGTTGTTTCAAGCCAACAAATTATAAGCAGGGAAGAAGTTGAAAATGTGAACAACAATGAAAACGGGTCATCTGATTGGAAGATGGGTTTGTATCAGTCTCCACAACAAGAGTCAAAGAGCTGTGACCAAAAATCCATGAAGTGTGGAAATTATAGAGGTTCTGCTTTCTCTGTGGCCCTACAAGATCTCATTGGGATTGACTCAGTAGGATCTAGCCAAGGCATGCTAGATGAGTCTACTAAGAGAGGGACTCATTTTTCAAACCCTTCCTCTCTGGTGACTAGTTTAAGCAGCTCAAGGGAAGGTAGCCCTGATAAAACGGGTCCCACATTGCTACTTCCAAAGCCTCCAATGGGATCAAAGATTGTTAACAGTAGTAGCTCCATTGCAAATGGGGTTAGTACTGTTAACTCTTGGTTTCCCTCTCAACTGAGGCCAGCTACTACTATCTCAATGTCTCACTTGCCAGTTTTTGCGGCTTGGAGTGATGCATAG	1860	0.4522	MCFGVGENSAFHSPLAMMPLKSDGSLCIMEALSRSQTQVMVPTSSPKLEDFLGGATMGAQDYGGHEREAMALSLDSIYYNSQNIEPQANRDHSSSLDLLSDPFRHQQSHPYYSGLACHGIYQAPLEEETKQSHVTVCSSQMPQVVEEGIACFKNWVPPREYSSSLEQHQVNSSTLGDNDHGASGSVGVGTVGCGDLQPLSLSMSPGSQSSCVTVPTQISPSGTDSVTVDAKKRGPAKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQAELEEMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKESEPRTEAIEYNVVSSQQIISREEVENVNNNENGSSDWKMGLYQSPQQESKSCDQKSMKCGNYRGSAFSVALQDLIGIDSVGSSQGMLDESTKRGTHFSNPSSLVTSLSSSREGSPDKTGPTLLLPKPPMGSKIVNSSSSIANGVSTVNSWFPSQLRPATTISMSHLPVFAAWSDA*	620

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr9g0340	619	SUPERFAMILY	DNA-binding domain	359	420	IPR016177	GO:0003677
	Apr9g0340	619	SUPERFAMILY	DNA-binding domain	257	326	IPR016177	GO:0003677
	Apr9g0340	619	PRINTS	Ethylene responsive element binding protein signature	259	270	IPR001471	GO:0003700\|GO:0006355
	Apr9g0340	619	PRINTS	Ethylene responsive element binding protein signature	400	420	IPR001471	GO:0003700\|GO:0006355
	Apr9g0340	619	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	2	617	-	-
	Apr9g0340	619	Pfam	AP2 domain	258	316	IPR001471	GO:0003700\|GO:0006355
	Apr9g0340	619	Pfam	AP2 domain	361	410	IPR001471	GO:0003700\|GO:0006355
	Apr9g0340	619	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT	2	617	-	-
	Apr9g0340	619	MobiDBLite	consensus disorder prediction	529	560	-	-
	Apr9g0340	619	Gene3D	AP2/ERF domain	257	326	IPR036955	GO:0003700\|GO:0006355
	Apr9g0340	619	Gene3D	AP2/ERF domain	360	420	IPR036955	GO:0003700\|GO:0006355
	Apr9g0340	619	Coils	Coil	325	345	-	-
	Apr9g0340	619	ProSiteProfiles	AP2/ERF domain profile.	360	418	IPR001471	GO:0003700\|GO:0006355
	Apr9g0340	619	MobiDBLite	consensus disorder prediction	529	573	-	-
	Apr9g0340	619	CDD	AP2	359	420	IPR001471	GO:0003700\|GO:0006355
	Apr9g0340	619	ProSiteProfiles	AP2/ERF domain profile.	258	324	IPR001471	GO:0003700\|GO:0006355
	Apr9g0340	619	CDD	AP2	257	324	IPR001471	GO:0003700\|GO:0006355
	Apr9g0340	619	SMART	rav1_2	360	424	IPR001471	GO:0003700\|GO:0006355
	Apr9g0340	619	SMART	rav1_2	258	330	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr9g0340	Apr-Chr9	4551741	4555308	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr9g0340	341	619	AP2-EREBP Transcription Factor Family	AT4G37750	26.367	2.52e-14	74.3

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Apr9g0340		AP2	1.4e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr9g0340	K09285		-	gmx:100798179	989.564

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr9g0340	9	4551741	4555308	Apr9g0340	9	4551741	4555308	ECH
	Apr9g0340	9	4551741	4555308	Apr5g1437	5	18449681	18453265	PCT