Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0339 ATGGGGGGTTCGGAAAATGCAATGGGGTTTCAACACGGAAATGAGAGCATTTTGACTTGTCCATCTTCAGGTCTAGATGCAGCTAATCCTTTTCTTGCTGCTTCTGCTTGGGATCCACTTGTTTCCTTGACTCAGGCTCAAACTTTTGGAGGCTCTTCAATGGTTTCTCATAGTGAGTTTGCCAATGCCAATTCTTCATATCCTCCTCTTGTTTTGGAAAATCAGGGAATCAGCAACACTTCCCACCTTGTTCAATACATGTCTGACTCAAATCTTGGTGGCATGGTCCCCAAGGTTCACTCCTATGCAAGTGGTGGTTTCTCAGAAATGGTTGGTGGTGGCTCTTTTAGCCAACATGGGTCTGGTGACATAGCTAACACAGTGTACCCCCAACATTATAATCCCATTCAGGAGGCTCCAATTAATGATGAACAATCTCATGTTGAGGACTCAACTCCTGAAGAGGAAGCACCAGGATCTGCACCTAGTGGGAATAGAAGAAAGAGAGGGCTTGATCATAATTCTACTTTTGGAACAAATAAGAATGCTGAGAGTGATGGGGTGAAAGATTCTCCTGGGAAGAGCTCTGATGGTCCAAAAGAACATGAAAAGAAACCAAAAGTTGAGCAGAATAGTAGTGCAGATTTGCGCGGTAAGCAATCAGTGAAGCAAACTAAAGACAACAATTCTCAGTGTGGAGAAGCTCCCAAAGATAATTTCATTCACGTGAGAGCGAGAAGAGGTCAAGCCACGAACAGCCACAGCCTTGCTGAAAGGGTGAGAAGAGAAAAGATTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGGTGCAACAAGATAACTGGCAAAGCTGTAATGCTGGATGAGATAATCAACTACGTGCAATCACTCCAGCAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACAGTGAACCCAGAACTGAACTTTGATGTAGAGCGGATCCTATCCAAGGATATTCTCCAGTCGCGCATAGGACATGGAATTGGTGGATACGGTTCTGGAATCAGCTCCTCCCATCCATTCCCCAATGGAAGTTTCCAGGGAACACTAGCTGGCATGCCTAGTACATCAACACAATACCCTCCTTTGCCTCAGACTGTTTTAGACCACGAGTTCCAAAGCTTCTTTGGAATGGGATTCGATTCTAGTACATCACTTGACAACTTGGGACCCAATGGGAGGTTGAAAACGGAGTTATAG 1230 0.448 MGGSENAMGFQHGNESILTCPSSGLDAANPFLAASAWDPLVSLTQAQTFGGSSMVSHSEFANANSSYPPLVLENQGISNTSHLVQYMSDSNLGGMVPKVHSYASGGFSEMVGGGSFSQHGSGDIANTVYPQHYNPIQEAPINDEQSHVEDSTPEEEAPGSAPSGNRRKRGLDHNSTFGTNKNAESDGVKDSPGKSSDGPKEHEKKPKVEQNSSADLRGKQSVKQTKDNNSQCGEAPKDNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERILSKDILQSRIGHGIGGYGSGISSSHPFPNGSFQGTLAGMPSTSTQYPPLPQTVLDHEFQSFFGMGFDSSTSLDNLGPNGRLKTEL* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0339 409 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 247 317 IPR036638 GO:0046983
Apr9g0339 409 CDD bHLH_AtBPE_like 239 324 - -
Apr9g0339 409 Pfam Helix-loop-helix DNA-binding domain 252 300 IPR011598 GO:0046983
Apr9g0339 409 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 26 409 IPR024097 GO:0006355
Apr9g0339 409 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 26 409 - -
Apr9g0339 409 MobiDBLite consensus disorder prediction 213 235 - -
Apr9g0339 409 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 249 299 IPR011598 GO:0046983
Apr9g0339 409 Gene3D - 246 320 IPR036638 GO:0046983
Apr9g0339 409 MobiDBLite consensus disorder prediction 144 238 - -
Apr9g0339 409 SMART finulus 255 305 IPR011598 GO:0046983
Apr9g0339 409 MobiDBLite consensus disorder prediction 187 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0339 Apr-Chr9 4534561 4538340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0339 1 409 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 42.180 3.99e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr9g0339 HLH 4.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0339 - - gmx:100801930 696.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0339 9 4534561 4538340 Apr9g0339 9 4534561 4538340 ECH