Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0331 ATGGGCAGGGCTCCTTGCTGCGACAAAGCAAACGTGAAGAAAGGTCCATGGTCACCAGAAGAAGACGCAAAGCTCAAGTCCTACATAGAAAAACATGGCACCGGCGGTAACTGGATTGCTTTGCCACAAAAAATCGGCCTGAAGCGATGTGGAAAGAGTTGTCGTCTTAGGTGGCTAAACTATCTTCGCCCTAATCTGAAGCACGGTGGTTTCTCTGAAGAAGAAGACAACATTATTTGCAGCCTCTACGTCAGTATTGGAAGCAGGTGGTCGGTGATTGCAGCTCAATTGCCAGGGAGAACCGATAATGACATAAAGAACTACTGGAACACGAGGCTGAAAAAGAAGCTTCTGGGTAAGCACCGTAGAGAACCACGTAATAGAGGCAACAATTACAACAGTATTAAGCAACAAAGCATTGTTAATAGAGGGAGTGATGGTGATTCTTCCTTATCCTTGGTTCAGGAAAATAATACTACTTCTACTACTACAACTCAACAACCATATTGGCCACAGAATATGCCCGTGCTACCACTACCAGTACCATTGCCAAACACAAACCAAGGTCCATGTTTCAATGACCAAGATTCTATTAAAAAATTGCTTATCAAACTCGGAGGGAGATTTTATGGTGATTATTACCATCCTACCGTTGATGGGATGAATCTTCAATTCTCAAATGGTGAACAAATTGGTGATCAAATTTATCAAGAACAAGTCCATTTGGGCGCTTCGTCTTCTTCTGCTTGCATTACTAGAGCCACGGTTAACAACAATGAGTTTCAATTTGCACAGAGTGATCAATACTTGGGGCAAGGACAAGGTAGTTTCACCTCAGGAATTGAGGAAATTAATGGATTTGAGTTCTTGTATGGAGAGGGCATGATCGACCATAAGATAATAGGCTCTACTACTACTGTTACTACTTGTAGCCAAAATAATACCAACTGGGGTGAAACTAGCACTCCCATTTATCATCATCCCCTTGCTTCCGATTACCAAAGTCGTCAAGGTTTGAGGCAAGAGAGTGCTTTGCAAGAGTTCAGCTACCCCGGGGCTCAATAA 1065 0.4291 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRREPRNRGNNYNSIKQQSIVNRGSDGDSSLSLVQENNTTSTTTTQQPYWPQNMPVLPLPVPLPNTNQGPCFNDQDSIKKLLIKLGGRFYGDYYHPTVDGMNLQFSNGEQIGDQIYQEQVHLGASSSSACITRATVNNNEFQFAQSDQYLGQGQGSFTSGIEEINGFEFLYGEGMIDHKIIGSTTTVTTCSQNNTNWGETSTPIYHHPLASDYQSRQGLRQESALQEFSYPGAQ* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0331 354 CDD SANT 71 113 IPR001005 -
Apr9g0331 354 SMART sant 13 64 IPR001005 -
Apr9g0331 354 SMART sant 67 115 IPR001005 -
Apr9g0331 354 MobiDBLite consensus disorder prediction 130 172 - -
Apr9g0331 354 Gene3D - 7 68 - -
Apr9g0331 354 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Apr9g0331 354 CDD SANT 16 62 IPR001005 -
Apr9g0331 354 Gene3D - 69 141 - -
Apr9g0331 354 MobiDBLite consensus disorder prediction 116 182 - -
Apr9g0331 354 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Apr9g0331 354 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Apr9g0331 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Apr9g0331 354 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 1 339 - -
Apr9g0331 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Apr9g0331 354 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Apr9g0331 354 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Apr9g0331 354 PANTHER OS09G0431300 PROTEIN 1 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0331 Apr-Chr9 4455586 4457352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0331 1 325 MYB Transcription Factor Family AT3G49690 45.181 4.62e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr9g0331 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0331 K09422 - gmx:100800290 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0331 9 4455586 4457352 Apr9g0331 9 4455586 4457352 ECH
Apr9g0331 9 4455586 4457352 Apr5g1429 5 18364937 18366329 PCT