Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0328 ATGAAGAGGTTTTATGCCTGCTGCTTCACAACCAGAGTTTCTAAGTCTCTCTCTCACTGGAAGCACAACCAGTCTCAGTCTCAGATAATGGCAGGAAACATCTCTGGTCTAAGTGGGATCAAAGCTGCTAATATTTTACTTAATCATGACTTCTCTAGTGGGCTGAACTCTTGGCATCTCAATTGCTGCAATGGCTATGTAATTTCAGCAGAAAAAGGTACTCAAGGAGGAGTTTCATTGGACTTGGATGGAAATTATGCTGTTATAACCGACCGAAAGGAATGCTGGCAAGGTCTTGAGCAAGATATCACAAACAGAATTTCCATTGGTTCCACTTACACGGTTTCAGCTTGTGTGGGAGTGTCCGGGCTTTCTCAGGGATCTAGTGATGTTCTAGCTACTCTGAAACTAGAATATCATGATTCAGATACTAGTTACTTGTTCATTGGAAGAACTTCAGTTATAAAGGGTAGTTGGGAAAAGTTGGAAGGAACATTCTCGTTGTCAACTATGCCTGATCGGGCTGTATTTTATTTGGAAGGACCTGCTCCTGGAGTCGACCTTTTGATACGATCAGTAAAGATCAATTGTTCCAGTCCAAATAACAATACCACAAGCACAGAATGTGTTTCAACTGGAGATGACAACATCATAATAAACCCCCAATTTGATGATGGCCTGAATAACTGGTCTGGAAGAGGCTGCAAGGTTGTGTTGCATGATTCCATGGGTGATGGGAAAATTGTTCCTAAGACTGGAAAATTCTTTGCATCTGCAACCGAACGCACGCAGAACTGGAATGGAATTCAGCAGGAGATCACAGGACGTGTGCAGCGCAAGCTTGCCTATGAGGTCACTGCTTTAGTTAGAATATATGGAAACAATGTCACTACTTCTGATGTAAGGGCTACTTTGTGGGTCCAAACACCAGATCTTCGAGAGCAGTATATAGGCGTTGCAAATGTGCAGGCAACAGATAAAGATTGGGTTACAATGCAGGGAAAATTTCTTCTAAATGGTTCTCCATCAAAAGTGGTCATTTATTTAGAGGGGCCTCCTCCAGGCACTGACATTCTTCTCAACAGTTTGGTCTTAAAGCATGCAGCTAAAACACCTCCTTCAACCCCACCGGATGTAAAGGATGTTGCTTTTGGGGTTAATATAATTGAGAACAGCAATCTGGCTGATGACACCAAAGGATGGTTCCCTCTTGGTAATTGCACTTTAACCGTTAAAACTGGTTCACCACATATTATTCCACCAATGGCAAGAGATTCTGTTGGTCCTCATGAACTTCTAAGCGGGCGCTATATCCTTGTAACTAATAGAACACAAACATGGATGGGCCCTGCTCAGGTTATCACAGATAAATTGAAGCTCTTTGTGACTTATCAAGTATCTGCTTGGGTCCGGATTGGTTCAGGATCAAATGGGCCACAGAATGTGAATGTTGCCCTTGGTGTTGATAACCAATGGGTCAATGGAGGACAAACTGAGGTTTCTGATGACAGGTGGCATGAAATTGGTGGGTCCTTTAGAATTGAAAAGCAGCCATCAAAGGTTATGGTTTATGTCCAAGGCCCTGCTTCTGGTGTAGACTTGATGGTTGCTGGACTTCAAATTTTTCCTGTCGATAGACATGCAAGATTTAGATATTTAAAGATGCAGACAGATAAGATCCGTAAACGTGATGTTATCCTGAAATTCTCTGGGCTGGACTCTAGCAGCTACCTTAACACCTCTGTGCAAGTTAGACAAACACAGAATGATTTCCCAATTGGTTCATGTATTAGTAGAACAAATATTGACAATGAAGACTTTGTTGACTTTATTGGGAAGCATTTTAACTGGGCTGTGTTTGGAAACGAGTTGAAGTGGTATTGGACTGAGCCACAACAAGGAAATTTCAATTACAAGGATGCTGATGACCTGTTAAGCTTATGTGAGAAGCACAACATACAAACTCGCGGCCATTGTATCTTCTGGGAAGTGGATGGAACAGTTCAGCAATGGATAAAATCACTGAACAAAAATGATTTGATGACAGCTGTTCAGAACCGCTTAAACGGCCTTTTAACTCGCTACAAGGGCAAATTCAGTCATTATGATGTTAACAATGAAATGCTGCATGGTTCATTTTACCAAGACAGACTAGGCAAGGATATAAGGGCAAACATGTTCAAGACTGCACACCAACTAGACCCTTCTGCTACATTGTTTGTGAATGACTATCATGTTGAGGATGGATGTGACACACGATCATGTCCAGAAAAGTACATTGATCACATTCTTAATTTGCAAGAGCAAGGTGCCCCAGTTGGGGGAATTGGAATTCAAGGCCACATAGATAGTCCAGTTGGGCCTATTGTTTGTTCCTCCCTTGATAAGTTGGGTATTCTTGGTCTACCTATATGGTTCACTGAGCTTGATGTGTCTTCCACCAATGAATATGTTAGAGCAGATGATCTAGAAGTTATGCTACGCGAAGCTATGGCACACCCTGCAGTAGAAGGCATGGTGCTGTGGGGATTTTGGGAGCTATTTATGAGCAGAGACAATGCACACTTGGTCAATGCAGAAGGTGAGATCAATGAAGCTGGAAAAAGGTTCCTTGCTCTAAAACAAGAGTGGCTGTCTCACAGCCGTGGCCATGTTGATGAGCAAGGTCAATACAACTTAAGAGGCTTTCATGGAACATACAATGTGCAAATTGTGACCCCGTCAAAGAAAATTTCTAAGAGATTTGTTCTTGACAAAGGTGACTCACCACTAGTGGTATCCATTGATTTGTAA 2793 0.4214 MKRFYACCFTTRVSKSLSHWKHNQSQSQIMAGNISGLSGIKAANILLNHDFSSGLNSWHLNCCNGYVISAEKGTQGGVSLDLDGNYAVITDRKECWQGLEQDITNRISIGSTYTVSACVGVSGLSQGSSDVLATLKLEYHDSDTSYLFIGRTSVIKGSWEKLEGTFSLSTMPDRAVFYLEGPAPGVDLLIRSVKINCSSPNNNTTSTECVSTGDDNIIINPQFDDGLNNWSGRGCKVVLHDSMGDGKIVPKTGKFFASATERTQNWNGIQQEITGRVQRKLAYEVTALVRIYGNNVTTSDVRATLWVQTPDLREQYIGVANVQATDKDWVTMQGKFLLNGSPSKVVIYLEGPPPGTDILLNSLVLKHAAKTPPSTPPDVKDVAFGVNIIENSNLADDTKGWFPLGNCTLTVKTGSPHIIPPMARDSVGPHELLSGRYILVTNRTQTWMGPAQVITDKLKLFVTYQVSAWVRIGSGSNGPQNVNVALGVDNQWVNGGQTEVSDDRWHEIGGSFRIEKQPSKVMVYVQGPASGVDLMVAGLQIFPVDRHARFRYLKMQTDKIRKRDVILKFSGLDSSSYLNTSVQVRQTQNDFPIGSCISRTNIDNEDFVDFIGKHFNWAVFGNELKWYWTEPQQGNFNYKDADDLLSLCEKHNIQTRGHCIFWEVDGTVQQWIKSLNKNDLMTAVQNRLNGLLTRYKGKFSHYDVNNEMLHGSFYQDRLGKDIRANMFKTAHQLDPSATLFVNDYHVEDGCDTRSCPEKYIDHILNLQEQGAPVGGIGIQGHIDSPVGPIVCSSLDKLGILGLPIWFTELDVSSTNEYVRADDLEVMLREAMAHPAVEGMVLWGFWELFMSRDNAHLVNAEGEINEAGKRFLALKQEWLSHSRGHVDEQGQYNLRGFHGTYNVQIVTPSKKISKRFVLDKGDSPLVVSIDL* 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0328 930 ProSitePatterns Glycosyl hydrolases family 10 (GH10) active site. 801 811 IPR031158 -
Apr9g0328 930 SUPERFAMILY Galactose-binding domain-like 214 368 IPR008979 -
Apr9g0328 930 PRINTS Glycosyl hydrolase family 10 signature 655 667 IPR001000 GO:0004553|GO:0005975
Apr9g0328 930 PRINTS Glycosyl hydrolase family 10 signature 737 748 IPR001000 GO:0004553|GO:0005975
Apr9g0328 930 PRINTS Glycosyl hydrolase family 10 signature 769 781 IPR001000 GO:0004553|GO:0005975
Apr9g0328 930 Gene3D Glycosidases 577 886 - -
Apr9g0328 930 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 205 930 - -
Apr9g0328 930 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 44 206 - -
Apr9g0328 930 SMART glyco_10 624 874 IPR001000 GO:0004553|GO:0005975
Apr9g0328 930 SUPERFAMILY (Trans)glycosidases 578 881 IPR017853 -
Apr9g0328 930 PANTHER GLYCOSYL HYDROLASE 205 930 IPR044846 GO:0004553|GO:0005975
Apr9g0328 930 PANTHER GLYCOSYL HYDROLASE 44 206 IPR044846 GO:0004553|GO:0005975
Apr9g0328 930 SUPERFAMILY Galactose-binding domain-like 43 198 IPR008979 -
Apr9g0328 930 Coils Coil 856 876 - -
Apr9g0328 930 SUPERFAMILY Galactose-binding domain-like 385 545 IPR008979 -
Apr9g0328 930 Pfam Carbohydrate binding domain 387 530 IPR003305 GO:0016798
Apr9g0328 930 Pfam Carbohydrate binding domain 215 352 IPR003305 GO:0016798
Apr9g0328 930 Pfam Carbohydrate binding domain 43 184 IPR003305 GO:0016798
Apr9g0328 930 Gene3D - 383 542 - -
Apr9g0328 930 Gene3D - 210 368 - -
Apr9g0328 930 Gene3D - 39 197 - -
Apr9g0328 930 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 578 873 IPR001000 GO:0004553|GO:0005975
Apr9g0328 930 Pfam Glycosyl hydrolase family 10 587 844 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0328 Apr-Chr9 4367463 4373709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0328 1 930 Glycoside Hydrolase AT1G58370 67.582 0.0 1353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0328 - - gmx:100816678 1709.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0328 9 4367463 4373709 Apr9g0328 9 4367463 4373709 ECH
Apr9g0328 9 4367463 4373709 Apr5g1425 5 18308002 18313825 PCT