Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1429 ATGGGAAGGGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGTCCATGGTCGCCAGAAGAAGATGCCAAACTCAAATCCTACATCGAACAGCACGGAACTGGTGGTAACTGGATCGCTTTGCCACAAAAGATTGGCCTTAAGCGATGTGGCAAGAGTTGCCGCCTGAGGTGGCTGAATTATCTCCGCCCTAACATTAAGCACGGAGGTTTCTCCGAAGAAGAAGACAACATTATTTGCAGCCTTTACATTAGTATTGGAAGCAGGTGGTCAGTGATTGCAGCCCAATTGCCAGGAAGAACTGATAATGACATAAAGAACTACTGGAACACTAGGCTGAAGAAGAAGCTTCTAGGGAAGCATCGGAAGGAACAACAAGCACGTAACAAAGGAAACGGTGTTGTTAAGCATGAGAGCTATTCTTCATCCATGGTTCAGGAAAATAGTACTCAACAACAGCCATATTGGCCACAGATTCCTTTGCTGCCACCGATGCCATACACAAACCAAGGTCCAAGTTTCAACGACCAAGACTCTATTAGAAAACTGTTAATCAAGCTTGGAGGGAGATTCTCTGATGATTATCAACCTATCCTTGATGGATTGAATCTTCAGTTCCCAGATGGTTGTTCTCCCTCATCAACACAACAAAATATTCATGAAGAGCAAATCCCTGTTGGCTCTTCTTGTTGCATGAACTCTATTAACAACAACGAAGTTCAATTTGCTCAGATTAATGAGTACTGTTCTGACTTGATGCAAGGACAAGGTAGTTTCACTGCAGCAATTGGGGAAATGGTTTCTACTAATTATTATCCGCACAGATTAAGTGGGTTGGAGTTCCTCTATGGAGAGGACATGATTACTGATAAGATAATGTGCACTTCTTCAACTTGTGGCCAAAGCACTAATTGGGGTGAGACAAGTTCTTTGATGAATCCTCCAATTGTTGCTTCCAATTATGAGGGTGTGAGGCAAGAGATGCCACGAGAATGTTCTTTCCAAGAGTTGAGCTACCCGGGGGCTCAATAG 1032 0.436 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKEQQARNKGNGVVKHESYSSSMVQENSTQQQPYWPQIPLLPPMPYTNQGPSFNDQDSIRKLLIKLGGRFSDDYQPILDGLNLQFPDGCSPSSTQQNIHEEQIPVGSSCCMNSINNNEVQFAQINEYCSDLMQGQGSFTAAIGEMVSTNYYPHRLSGLEFLYGEDMITDKIMCTSSTCGQSTNWGETSSLMNPPIVASNYEGVRQEMPRECSFQELSYPGAQ* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1429 343 CDD SANT 71 113 IPR001005 -
Apr5g1429 343 Gene3D - 7 68 - -
Apr5g1429 343 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Apr5g1429 343 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Apr5g1429 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Apr5g1429 343 PANTHER OS09G0431300 PROTEIN 1 332 - -
Apr5g1429 343 CDD SANT 16 62 IPR001005 -
Apr5g1429 343 Gene3D - 70 138 - -
Apr5g1429 343 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Apr5g1429 343 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Apr5g1429 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Apr5g1429 343 MobiDBLite consensus disorder prediction 119 141 - -
Apr5g1429 343 SMART sant 13 64 IPR001005 -
Apr5g1429 343 SMART sant 67 115 IPR001005 -
Apr5g1429 343 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 1 332 - -
Apr5g1429 343 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1429 Apr-Chr5 18364937 18366329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1429 1 186 MYB Transcription Factor Family AT3G49690 66.169 5.13e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr5g1429 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1429 K09422 - gmx:778079 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1429 5 18364937 18366329 Apr5g1429 5 18364937 18366329 ECH
Apr9g0331 9 4455586 4457352 Apr5g1429 5 18364937 18366329 PCT