Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1425 ATGAAGGGAATCATCTCAGGTCCTAGTGGGAGCAAGGTTACTAATATGTTACTAAATCATGACTTTTCAGACGGGCTGAACTCTTGGCATCTCAATCGCTGTGATGGCTATGTAATTTCACCTGAATCAGGTCCTCAGCGAGGTGTGGAAATGGACTCGCATGGTAATTATGCTGTTATCACAAACCGGAAGGAATGCTGGCAAGGCCTTGAGCAAGATATCACAGATAAAATTTCCGTTGGTTCCACTTACTTTGTTTCAGCTTGTGTTGGAGTATCTGGGCTTACTCAAGGGTCTACTGATGTTCTAGCTACTCTGAAACTAGAATATCATAATTCAGATGCTAACTACTTGTGCATTGGAAGAACTTCTTGTGTGAAGGGTAGCTGGGAAAAGTTGGAAGGGTCATTTTCATTGTCCACTATGCCTGATCGGGTCATATTTTATTTGGAAGGACCTGCTCCTGGAGTTGACCTGCTTATACAATCAGTAGACATCATCTGCTCCAGCCCAACTGATTATGAAAATCATACAACAAACAAGGGGTGTGCTTCCACTGAAGATGAAAATATCATAATAAATCCCCAGTTTGAGGATGGCCTGAATAATTGGTCTGGAAGAGGCTGCAAGATTGTATTACATGATTCCATGGGAGATGGGAAAATCCTTCCAAAGTCTGGAAAATTCTTTGTATCTGCAACAGAACGTACCCAAAGCTGGAATGGAATTCAGCAGGAGATCACTGGACGAGTGCAGCGCAAGCTTGCCTATGAGGTTACTGCTGTAGTTCGGATATTTGGGAACAATGTCACCACTTCTGGTGTACGTGCTACATTGTGGGTTCAAGCACCAGATCTTCGAGAGCAGTATATAGGCATTGCCAATGTGCAGGCAACAGATAAAGATTGGGTTCAAATGCAGGGAAAATTCCTTTTGAATGGTTCCCCATCAAAAGTGGTTGTTTATTTAGAAGGTCCTCCTGCAGGCACTGACATTCTTGTCAATACTTTGGTAGTCAAGCATGCAGCTAAAACACCACCTTCTACACCCCCTGACTGTGAGAGTGCTGCTTTTGGTGTTAATATAATTGAGAATAGTAATCTGGCTAATGGCACCAACGGATGGTTCTCACTTGGTAATTGTACTTTGAGTGTTGGAGCCGGTTCACCGCGTATAATTCCACCAATGGCAAGAGATTCTCTTGGGCCTCATGAATCCTTAAGCGGGCGCTATATCCTTGTAACCAATCGCACACAAACATGGATGGGTCCTGCTCAGATGATCACTGAGAAATTGAAACTCTTTCTAACTTATCAAGTCTCTGCTTGGGTTCGGATTGGTTCTGGATCAACCGGTCCTCAGAATGTGAACATTGCCCTTAGTGTTGACAACCAGTGGGTCAACGGAGGACAAGTTGAGCTTGCTGATGACAGGTGGCATGAAATTGGTGGGTCCTTTAGAATTGAAAAGCAGCCATCTAAGGTTATGGTTTATATCCAAGGTCCTGCTTCTGGTGTCGACTTAATGGTTGCTGGACTTCAAATTTTTGCTGTTGATAGACAAGCTCGGTTTAAATATTTAAGGAGGCAGACAGACAAGGTCCGTAAGCGTGATGTAATCCTAAAATTCTCTGGGCTAGACTCAAGCAGTAATCTTGGAACATTTGTGAAAGTTAGACAGATACAAAATGATTTTCCAATTGGATCATGCATCAGTAGAACCAATATTGACAATGAAGATTTTGTTGACTTCTTTGTGAAGCATTTTAACTGGGCTGTTTTTGGGAATGAGTTGAAGTGGTATTGGACTGAGCCACAACAAGGGAATTTGAACTACAAGGATGCTGATGATATGTTAGACTTCTGTCAGAAGAACAAGATAGAAGCCCGTGGTCATTGTATCTTCTGGGAAGTGGATGGCACTGTTCAGCAATGGATCAAATCATTAAATAAAAATGATTTGATGACAGCTGTCCAAAACCGCTTAACTAGCTTATTGACTCGCTACAAGGGGAAGTTCAGGCACTATGATGTTAATAATGAAATGATGCATGGTTCATTTTATCAGGATAGACTAGGTAAGGATATCAGGGCCAACATGTTTAAGAATGCACACCAACTAGATCCATCTGCTACACTGTTTGTGAATGATTATCATGTTGAAGATGGATGTGACACCAAATCATCTCCAGAAAAGTACATTCAACATATTCTCGAGTTGCAAGGGCAAGGTGCCCCAGTTGGAGGAATAGGAATTCAAGGTCACATAGATAGTCCTGTGGGACCTATAGTTTGTTCTGCCCTTGATAAATTGGGTACTCTTGGTCTTCCAATATGGTTCACTGAGCTTGATGTGTCTTCCACCAATGAATATGTTAGAGCTGATGATCTAGAAGTTATGCTGCGGGAAGCAATGGCACATTCTGCAATAGATGGTATAATGCTATGGGGATTTTGGGAATTGTTTATGAGCCGGGACAATGCACACTTGGTGGATGCAGAAGGTGATCTCAATGAAGCTGGGAAAAGATACCTTGCTCTCAAACAAGAGTGGCTATCTCACAGCCATGGTTATGTTGATGAGCAAGGTCAATTCAGCTTCAGAGGCTTTAGTGGAACATACAGTGTGGAAGTTGTGACCTTGGCAAAGAAAATTTCTAAGACGTTTGTTGTTGATAAGGGTGACTCGTCACTAGTGGTATCAATTAATTTATAA 2715 0.4214 MKGIISGPSGSKVTNMLLNHDFSDGLNSWHLNRCDGYVISPESGPQRGVEMDSHGNYAVITNRKECWQGLEQDITDKISVGSTYFVSACVGVSGLTQGSTDVLATLKLEYHNSDANYLCIGRTSCVKGSWEKLEGSFSLSTMPDRVIFYLEGPAPGVDLLIQSVDIICSSPTDYENHTTNKGCASTEDENIIINPQFEDGLNNWSGRGCKIVLHDSMGDGKILPKSGKFFVSATERTQSWNGIQQEITGRVQRKLAYEVTAVVRIFGNNVTTSGVRATLWVQAPDLREQYIGIANVQATDKDWVQMQGKFLLNGSPSKVVVYLEGPPAGTDILVNTLVVKHAAKTPPSTPPDCESAAFGVNIIENSNLANGTNGWFSLGNCTLSVGAGSPRIIPPMARDSLGPHESLSGRYILVTNRTQTWMGPAQMITEKLKLFLTYQVSAWVRIGSGSTGPQNVNIALSVDNQWVNGGQVELADDRWHEIGGSFRIEKQPSKVMVYIQGPASGVDLMVAGLQIFAVDRQARFKYLRRQTDKVRKRDVILKFSGLDSSSNLGTFVKVRQIQNDFPIGSCISRTNIDNEDFVDFFVKHFNWAVFGNELKWYWTEPQQGNLNYKDADDMLDFCQKNKIEARGHCIFWEVDGTVQQWIKSLNKNDLMTAVQNRLTSLLTRYKGKFRHYDVNNEMMHGSFYQDRLGKDIRANMFKNAHQLDPSATLFVNDYHVEDGCDTKSSPEKYIQHILELQGQGAPVGGIGIQGHIDSPVGPIVCSALDKLGTLGLPIWFTELDVSSTNEYVRADDLEVMLREAMAHSAIDGIMLWGFWELFMSRDNAHLVDAEGDLNEAGKRYLALKQEWLSHSHGYVDEQGQFSFRGFSGTYSVEVVTLAKKISKTFVVDKGDSSLVVSINL* 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1425 904 Gene3D Glycosidases 552 858 - -
Apr5g1425 904 SUPERFAMILY Galactose-binding domain-like 188 342 IPR008979 -
Apr5g1425 904 ProSitePatterns Glycosyl hydrolases family 10 (GH10) active site. 775 785 IPR031158 -
Apr5g1425 904 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 16 166 - -
Apr5g1425 904 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 178 904 - -
Apr5g1425 904 PANTHER GLYCOSYL HYDROLASE 16 166 IPR044846 GO:0004553|GO:0005975
Apr5g1425 904 PANTHER GLYCOSYL HYDROLASE 178 904 IPR044846 GO:0004553|GO:0005975
Apr5g1425 904 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 549 847 IPR001000 GO:0004553|GO:0005975
Apr5g1425 904 SUPERFAMILY Galactose-binding domain-like 359 519 IPR008979 -
Apr5g1425 904 PRINTS Glycosyl hydrolase family 10 signature 629 641 IPR001000 GO:0004553|GO:0005975
Apr5g1425 904 PRINTS Glycosyl hydrolase family 10 signature 711 722 IPR001000 GO:0004553|GO:0005975
Apr5g1425 904 PRINTS Glycosyl hydrolase family 10 signature 743 755 IPR001000 GO:0004553|GO:0005975
Apr5g1425 904 SMART glyco_10 598 848 IPR001000 GO:0004553|GO:0005975
Apr5g1425 904 Pfam Carbohydrate binding domain 15 155 IPR003305 GO:0016798
Apr5g1425 904 Pfam Carbohydrate binding domain 361 504 IPR003305 GO:0016798
Apr5g1425 904 Pfam Carbohydrate binding domain 190 327 IPR003305 GO:0016798
Apr5g1425 904 Pfam Glycosyl hydrolase family 10 561 818 IPR001000 GO:0004553|GO:0005975
Apr5g1425 904 Coils Coil 830 850 - -
Apr5g1425 904 Gene3D - 9 167 - -
Apr5g1425 904 Gene3D - 355 517 - -
Apr5g1425 904 Gene3D - 183 342 - -
Apr5g1425 904 SUPERFAMILY Galactose-binding domain-like 15 170 IPR008979 -
Apr5g1425 904 SUPERFAMILY (Trans)glycosidases 556 855 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1425 Apr-Chr5 18308002 18313825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1425 10 904 Glycoside Hydrolase AT1G58370 70.156 0.0 1335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1425 - - lja:Lj0g3v0316669.1 1546.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1425 5 18308002 18313825 Apr5g1425 5 18308002 18313825 ECH
Apr9g0328 9 4367463 4373709 Apr5g1425 5 18308002 18313825 PCT