Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0689 ATGGGCAACCTCTTCAGCAAAAATAAAAAGCATGGCACTCAAAATGATAAAAGAAGAGATAGAGGAATCTACACTGCCATAACTACCACCAGGGGTTTATCATCATCTCATTTCTCAACACAGGTACCTTTGCCACCGCCGCTGCCACCATTGTCATCGGCACCACCTTCAGTATCGTATCCAAGTCTAGTATCTCTACCTCCTCCACCTCCGCCGCCACCACCTAAAACAAAATCCATATCCAAGAAATCAAGTTTTGGGAGAGCTAAGTCTGGTCGGAGCTCATCAAACATGAACAAAAGGCAATCTGCCAACAAGTATGCTTTCATTCCTGACCATTTCTCAACCCTTGAACAGGTTACAACGGCCTTGAGGAAAGAAGGATTGGAGTCATCAAATCTCATCCTTGGAGTTGATTTCACAAAGAGCAATGAATGGACTGGCAGAATCTCATTTAATAAGAAAAGCCTTCATGCTATTGGAGATACACCTAACCCCTATGAGAAGGCCATCTCCATTATTGGCAAGACTATGGCTCCCTTTGATGATGATAACTTGATTCCATGCTTTGGCTTTGGTGATGCTACAACCCATGATCAAGAAGTGTTCAGCTTTCACAGTGATCATTCACCTTGTCATGGCTTTGAAGAAGTTTTGGCTTGCTACCAAAAAATTGTTCCAAACTTGAAACTTTCAGGGCCAACTTCTTATGCTCCTGTGATTGAGGCTGCAATAGACATAGTTGAGAAAAATCGTGGCCAATTCCATGTGTTAGTTATCATTGCAGATGGTCAGGTTACAAGAAGTGTCAACACTGAAGACGGAGAACTTAGTCCTCAAGAAGAGAAGACAATCAAAGCAATCGTTGATGCAAGTGCATATCCACTTGCGATAGTTCTGGTTGGAGTTGGTGATGGACCTTGGGAAGACATGAGAAAGTTTGATGACAAGATACCCGCAAGTGATTATGACAATTTTCAGTTTGTTAATTTCACGGATATTATGTCTAAAAACACAAGCTCCTCTGAGAAAGAAGCAGCTTTTGCTCTGGCTGCTCTCATGGAGATCCCCTTCCAATATAAAGCAACCGTAGAATTTGGATTACTTGGACGCGTAACAGGAAGAGCGAAGAGAATAGTTCCAAAACCTCCTCCAGTTCCTTATTCTCGGCCTGCAGCCCCTCCAGCTCGTGTACCAAGCAACACAACAGCATCCCCTGCAGATGAACAAAACCAAGCAGTCTGCCCAATTTGTTTGACCAATCCAAGAGATTTAGCCTTTGGATGTGGGCACATGACTTGCAGAGACTGTGGATACAGGGTAACTAATTGTCCCATATGCAGAGAGAGGATCAGTAGTCGTCTCAGGGTGTACAGTGGGTGA 1383 0.4367 MGNLFSKNKKHGTQNDKRRDRGIYTAITTTRGLSSSHFSTQVPLPPPLPPLSSAPPSVSYPSLVSLPPPPPPPPPKTKSISKKSSFGRAKSGRSSSNMNKRQSANKYAFIPDHFSTLEQVTTALRKEGLESSNLILGVDFTKSNEWTGRISFNKKSLHAIGDTPNPYEKAISIIGKTMAPFDDDNLIPCFGFGDATTHDQEVFSFHSDHSPCHGFEEVLACYQKIVPNLKLSGPTSYAPVIEAAIDIVEKNRGQFHVLVIIADGQVTRSVNTEDGELSPQEEKTIKAIVDASAYPLAIVLVGVGDGPWEDMRKFDDKIPASDYDNFQFVNFTDIMSKNTSSSEKEAAFALAALMEIPFQYKATVEFGLLGRVTGRAKRIVPKPPPVPYSRPAAPPARVPSNTTASPADEQNQAVCPICLTNPRDLAFGCGHMTCRDCGYRVTNCPICRERISSRLRVYSG* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0689 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 459 IPR013083 -
Apr2g0689 460 SUPERFAMILY RING/U-box 406 454 - -
Apr2g0689 460 CDD RING-HC_RGLG_plant 414 458 IPR045317 GO:0061630|GO:0070534
Apr2g0689 460 Pfam Zinc finger, C3HC4 type (RING finger) 413 453 - -
Apr2g0689 460 MobiDBLite consensus disorder prediction 79 102 - -
Apr2g0689 460 SUPERFAMILY vWA-like 132 315 IPR036465 -
Apr2g0689 460 MobiDBLite consensus disorder prediction 380 407 - -
Apr2g0689 460 Pfam Copine 156 368 IPR010734 -
Apr2g0689 460 PANTHER COPINE FAMILY PROTEIN 1 1 459 - -
Apr2g0689 460 MobiDBLite consensus disorder prediction 1 102 - -
Apr2g0689 460 SMART ring_2 415 447 IPR001841 -
Apr2g0689 460 PANTHER UBIQUITIN-PROTEIN LIGASE RGLG2-LIKE PROTEIN, PUTATIVE-RELATED 1 459 - -
Apr2g0689 460 MobiDBLite consensus disorder prediction 27 41 - -
Apr2g0689 460 ProSiteProfiles Zinc finger RING-type profile. 415 448 IPR001841 -
Apr2g0689 460 MobiDBLite consensus disorder prediction 380 394 - -
Apr2g0689 460 MobiDBLite consensus disorder prediction 10 24 - -
Apr2g0689 460 SMART VWA_4 131 331 IPR002035 -
Apr2g0689 460 MobiDBLite consensus disorder prediction 42 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0689 Apr-Chr2 8561227 8568163 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0689 2 8561227 8568163 Apr2g0689 2 8561227 8568163 ECH