LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo17g2953	ATGAAGTGGATCAACAGTGATGGTAACAATCATAACGCCTGGTTGGGCTTCTCTCTCTCACCCCATCACATGAAATTCGACCTTCCTAATTCTTCTTCTTCTTCTTCTTCTACTTCGTCCTCCTCCTGCGGTGGGGATCACAGTGCTGCCTTTCATTCTCAGTTGAGCGTGATGCCTCTCAAGTCAGACGGTTCACTTTGCATCATGGAAGCTCTCACTAGATCACATCAAACACAACAAGTGATGGTTGGTAGTTCGTCTCCGAAGCTGGAAGACTTTCTGGGTGGTGCAAGCATGGGAACACACGAAAGAGAGGCCATTGACACCATCTACTACCCTCCTCATAGAGGCTTTCTCTCAGAGCCTTTGAGGCATCCACCATATTACTCCCTTGGCTGCCATGGCATGTACCAAGCACCACCCCCAACAATGCCCCACATAGCAGAAGCAGCAGCAGAAGAAGAAGAAGAAGAAGGCATTGATGGATTCAAGAAGTGGGTGGAGCAGCAGCAGCAGCAGCAGCAGCAGTCGCTGAGTCTGTCAATGAGTCCAGGGTCGGAGTCAAGTTGTGTAACAGCTGCGAGGCATGAGAATGGGAAGAGTGAGTCGTCGGTGGTGGCAGTAACAGTAATGGACAATAGCAACAAGAAGAGAGGGCTAGCTAACAAGCAACCAGTTCACAGAAAATCCATTGACACTTTTGGTCAGAGAACTTCTCAGTATCGAGGCGTCACCAGGCATAGATGGACTGGTAGATACGAAGCACATTTATGGGATAACACTTGCAAGAAGGAAGGCCAAACTAGGAAAGGAAGACAGGTGTATTTGGGGGGTTATGATATGGAACAAAAAGCTGCAAGAGCCTATGATCTTGCTGCCCTTAAGTACTGGGGACCTTCAACCCACATCAATTTTCCGTTGGAAAATTACCAAGCGGAACTTGAGGAGATGAAGAACATGACCAGGCAGGAATATGTCGCCCACTTGAGAAGAAAAAGCAGTGGATTTTCTAGGGGTGCTTCAATATACAGAGGGGTGACAAGACATCATCAACATGGAAGATGGCAAGCAAGGATTGGCAGAGTTGCTGGGAACAAGGACCTTTACCTTGGGACATTCAGCACTCAAGAGGAGGCAGCAGAAGCATATGATGTAGCAGCAATCAAGTTCCGTGGTTCCAATGCAGTTACAAACTTTGACATATCAAGATACGACGTGGAAAGAATCATGGGGAGTAACACTTTGCTTGCAGGGGAGCTAGCTAGGCGAAACAACAAAGATACTGCTATTGACCCACCAAGATGGGAGGCCATTGAATACAACACGAATGTGGAAGCAGTTCAAGCTAGAAACAACAACAATGACAATACTAATAATAACAATGATGTTGATTCAAACTGGAAGATGGTTTCTGGTGGTGCTTTCTCTGTGGGGATACATGATCTGATTGGGATTGAAGGGCAGCAGCCATTGATGGAGGCTTCTTCGCTTGTGACCAGCCTAAGCAGCTCAAGAGAGGCTAGCCCTGAAAAAATAATGGGTCCCTCGTCAATGATGTTTCCAAAACCTCTTCAACTTGAACCCAAGATGGTTCTTAACAACCCCTTAACTAGTACTGGTGTTGTTGGATCTTGGTTCCCTTCTCAAATGAGGCCAGCTTCTTTGTCTCACTTGCCTGTTTTTGCTGCTTGGAACGATACCTAG	1704	0.4677	MKWINSDGNNHNAWLGFSLSPHHMKFDLPNSSSSSSSTSSSSCGGDHSAAFHSQLSVMPLKSDGSLCIMEALTRSHQTQQVMVGSSSPKLEDFLGGASMGTHEREAIDTIYYPPHRGFLSEPLRHPPYYSLGCHGMYQAPPPTMPHIAEAAAEEEEEEGIDGFKKWVEQQQQQQQQSLSLSMSPGSESSCVTAARHENGKSESSVVAVTVMDNSNKKRGLANKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNTCKKEGQTRKGRQVYLGGYDMEQKAARAYDLAALKYWGPSTHINFPLENYQAELEEMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGSNAVTNFDISRYDVERIMGSNTLLAGELARRNNKDTAIDPPRWEAIEYNTNVEAVQARNNNNDNTNNNNDVDSNWKMVSGGAFSVGIHDLIGIEGQQPLMEASSLVTSLSSSREASPEKIMGPSSMMFPKPLQLEPKMVLNNPLTSTGVVGSWFPSQMRPASLSHLPVFAAWNDT*	568

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo17g2953	567	ProSiteProfiles	AP2/ERF domain profile.	240	306	IPR001471	GO:0003700\|GO:0006355
	Amo17g2953	567	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT ISOFORM X1	10	105	-	-
	Amo17g2953	567	CDD	AP2	341	402	IPR001471	GO:0003700\|GO:0006355
	Amo17g2953	567	CDD	AP2	239	306	IPR001471	GO:0003700\|GO:0006355
	Amo17g2953	567	Pfam	AP2 domain	240	298	IPR001471	GO:0003700\|GO:0006355
	Amo17g2953	567	Pfam	AP2 domain	342	392	IPR001471	GO:0003700\|GO:0006355
	Amo17g2953	567	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT ISOFORM X1	173	565	-	-
	Amo17g2953	567	SUPERFAMILY	DNA-binding domain	341	402	IPR016177	GO:0003677
	Amo17g2953	567	SUPERFAMILY	DNA-binding domain	239	308	IPR016177	GO:0003677
	Amo17g2953	567	SMART	rav1_2	342	406	IPR001471	GO:0003700\|GO:0006355
	Amo17g2953	567	SMART	rav1_2	240	312	IPR001471	GO:0003700\|GO:0006355
	Amo17g2953	567	PRINTS	Ethylene responsive element binding protein signature	382	402	IPR001471	GO:0003700\|GO:0006355
	Amo17g2953	567	PRINTS	Ethylene responsive element binding protein signature	241	252	IPR001471	GO:0003700\|GO:0006355
	Amo17g2953	567	MobiDBLite	consensus disorder prediction	167	189	-	-
	Amo17g2953	567	ProSiteProfiles	AP2/ERF domain profile.	342	400	IPR001471	GO:0003700\|GO:0006355
	Amo17g2953	567	Gene3D	AP2/ERF domain	342	402	IPR036955	GO:0003700\|GO:0006355
	Amo17g2953	567	Gene3D	AP2/ERF domain	239	308	IPR036955	GO:0003700\|GO:0006355
	Amo17g2953	567	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	10	105	-	-
	Amo17g2953	567	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	173	565	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo17g2953	Amo-Chr17	131848893	131852093	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo17g2953	3	430	AP2-EREBP Transcription Factor Family	AT4G37750	54.694	5.60e-160	466

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Amo17g2953		AP2	3.5e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo17g2953	K09285		-	gmx:100802454	602.823

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo08g0865	08	14875839	14878869	Amo17g2953	17	131848893	131852093	hybridization
	Amo16g4123	16	153782929	153787508	Amo17g2953	17	131848893	131852093	PCT
	Amo17g2953	17	131848893	131852093	Amo16g4123	16	153782929	153787508	PCT