Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2947 ATGAAGGAGGAAGCAGGGAAAGACAAAGACAAAGGCGAAGAAGGTCCCAAGCTTTGGGGAATTTTCCTATTCGCCCTAATTGGCGCCACCGCCACTACTTTTGCCGTTGGTCAGCTGCGGAGGACTGTTGATTGGTTCTATTTGCAGTGGTCCAGGTCACAATCGTCAGGGAAAGGAAGGAGTGGCGGTTCTTTCCGAACAGCGTTTCAGGAAGAAGCATGGAGGAGACACAATAAACGGATGCAAGAAGAGTATGAGGAGGAGATGGAAAGAGTGGAACGAATAAGGCGTATGCAAAATGTGTTTAACAGAGAAAGAAATAAATACAGAAGAAGCTATGAAAGCTGGAAGGACGGTGGACCTGGTGCGTATCATCAGAATTTCCAGAGAGAAGATTGGTATTGGAAGACTGATACATCCTTCAAAGATCATAATTGGAGGACAAATTATCGAGAAGCTCCTCGAGAGAGTGGAAGCTATGCGTTATCGCATCACTACTCAGTTTTGGGTCTTGACAGGTTTAGAAGAACTCCATACTCAGATGATGAGATTAAGACAGCATTTAGGACAAAGGCAAAAGAGCATCATCCTGATCAGAACCAGGATAATAGAGAAGCTGCTGAGGCTAAATTCAAAGAAGTGATGACTTCATACGAGGCCATAAAACATGAACGTAAGAATGGGAGTATGTAA 693 0.4416 MKEEAGKDKDKGEEGPKLWGIFLFALIGATATTFAVGQLRRTVDWFYLQWSRSQSSGKGRSGGSFRTAFQEEAWRRHNKRMQEEYEEEMERVERIRRMQNVFNRERNKYRRSYESWKDGGPGAYHQNFQREDWYWKTDTSFKDHNWRTNYREAPRESGSYALSHHYSVLGLDRFRRTPYSDDEIKTAFRTKAKEHHPDQNQDNREAAEAKFKEVMTSYEAIKHERKNGSM* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2947 230 Pfam DnaJ domain 165 226 IPR001623 -
Amo17g2947 230 ProSiteProfiles dnaJ domain profile. 164 226 IPR001623 -
Amo17g2947 230 SMART dnaj_3 163 226 IPR001623 -
Amo17g2947 230 Gene3D DnaJ domain 158 229 IPR036869 -
Amo17g2947 230 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 6 228 - -
Amo17g2947 230 PRINTS DnaJ domain signature 188 203 IPR001623 -
Amo17g2947 230 PRINTS DnaJ domain signature 206 226 IPR001623 -
Amo17g2947 230 SUPERFAMILY Chaperone J-domain 163 226 IPR036869 -
Amo17g2947 230 CDD DnaJ 165 219 IPR001623 -
Amo17g2947 230 Coils Coil 71 98 - -
Amo17g2947 230 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 6 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2947 Amo-Chr17 131775140 131778160 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2947 - - gmx:100812371 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0871 08 14945392 14948107 Amo17g2947 17 131775140 131778160 hybridization
Amo16g4114 16 153667629 153670116 Amo17g2947 17 131775140 131778160 PCT
Amo17g2947 17 131775140 131778160 Amo16g4114 16 153667629 153670116 PCT