Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4130 ATGTTTCTTCTGTATTACGAGGATTATACTGTTAAAATGGCCAATAATTCTCAGCCCCCTAGTATGCAGCTGCTCTTTGCTGTTCCTTTTGTTAACTACTACTTCTTGCTCTCATATGGGAATATTTTGCAAGTTTGCATCACTCTTAGAACTCCTTATCTGCAGTTTCGGCCAGTCATTCAGGCCCAGCAAGGTCAGCCATTTGCTCCAATGGCTTCCCAACAATTTGGACTTGCAGGACATGCTATTCCTTCTTCAAATGTTGCAATGCCTGTTGGTCAGAGTCMGCAATTRCAGTATTCACAACCAATGCAGCAGTTGCCTCCAAGACATATTCAGCCTGGTCAACCTGCACCTTCGTCGCAGCCAACTGTTCCCCACTTAAGCAGTCATATGCCCAGCTTGGCTGTTTCAGCAGCAACTTCTCATTCTTCATATACTTTTCAACCACCGTATAGTCAGCAGCAGGATAATGTTAATGCAATGGCTCAGTACCAGCCATCGGGCCAAATGCATGCTCCTCCGGCTGGACAACCTTGGGTGTCCTCTGTTTCTCAGAGTGCTGCAACTGTTACACCAGTGCAACAGGCTGGAGTGCAATCATCTGGTACTCCGTCAACTGATTCTGCAACAAGTGCCCCTAACCAGCAGTCAGCATCTGATTGGCAAGAGCATACTGCAGCTGATGRCAGAAGATATTACTACAACAAGAGGACAAGGCAATCTAGTTGGGAGAAACCATTGGAACTGATGTCACCTATTGAGAGGGCTGATGCATCAACTGTTTGGAAAGAATTCACATCTTCAGATGGAAGAAAGTATTATTACAACAAGGTTACTCAGCAATCAACATTGGTTCCAATCCACGAAGGAACTAAACTATTGGCTACTTGGCTCGTGAATTCGCTGAAAGCTGCCAACCAGGGAATGCAGTTAGAAACAAGTGATACATCCAATACTGCTGTTTCATCTGCTGCACCATCAACATCCAGCTTCTGTCACACCAATTGCATCATCAACTGGTCCTCTGCAGCAGTTGGTTCTGGATTATTCAAGTGGTGGACTGAACTGAGTACTTTGGTAACTGCGTCAACGACAGTAGCTGGACCTGCAAATCCTCTTGACACCACTACACCGTCCAGGTATTTTGACTGCACTACGCCCGGCTGCGCATTTTGTTGCTATCTTGCAGGAAACCAAAAAGGAGTGCCAGTTGCTGGAAAAGTTAATGTGACTCTGCCGGAGGAGAAAGCAAATGATAAAGAAACCTTTGCATATGCAAATAAGATGGAAGCAAAAATTGCATTTAAGGCACTATTGGAGTCTGCTAATGTTCAGTCTGATTGGACATGGGAACAGGCGATGAGAGAAATAATCAATGACAAAAGATACAATGCTCTAAAAACACTTGGTGAGCGGAAACAAGCTTTTAATGAGTATTTGGGCCAAAGGAAGAAGCTAGAGGCTGAAGAGAGACGCATGAAGCAGAAAAAAGCTCGAGAAGAATTCACAAAGATGCTGGAAGTAAGAGTGCAAGGAGCTAACTTCATCCATGAGATTGAGGAAAAGGAAAATGCTGCTGAGGAACACAGACGGAATTTAGCAGAATACAGGAAATTCTTGGAGTCATGTGATTATGTGAAGGTTCACAGTCCATGGCGAAAAGTCCAAGATCGGTTAGAGGACGATGATAGATATTTACGGCTTGAAAAAATTGACCGCTTGCTTGTTTTCCAGGACTATATTCGTGAATTGGAAAARGAAGAAGAGGAGCAAAAACGAGTACAGAAGGAGCGAGTTCGTCGTGGTGAAAGGAAAAATCGTGATGCATTCCGCAAGTTGTTGGAAGAACATGTTGCTGCTGGAATTCTTAATGCTAAAACTCAATGGAGAGAATACTGCTTGAAGGTTAGGGATTTGCCTCAATATCAAGCTGTCGCATCAAACACATCTGGTTCCACTCCTAAGGATTTRTTTGAGGATGTAGTAGAAGATCTTGAAAATCAGTACCATGAAGACAAGACACTGGTAAAAGATATAATTAAGTCAGGCAAGATCACTGTAGTGTCCACTTCGGTGTTTGAGGAATTCAAGGCTGCTATCTTGGAAGAAGGTAGTTGCGAAACAATATCAGAGATCAATTTGAAGCTTATATTCGAAGACTTGTTAGAGAGAGCTAAAGAGAAAGAGGAGAAAGAAGCTAAGAAGCGCCAGCGCCTTGCTGATGACTTAACTAACCTGTTATATACATTCAAGGATATTACTACATCTTCAACTTGGGAGGATTGCAAGCCACTTGTTGAGGAGACACAAGAGTACAGATCAATGGGGGATGAAAACTACAGTAGAGAAGTATTTGARGAGTACATTACATACCTAAAGGAAAAAGCTAAAGAGAAGGAACGCAAGCGTGAAGAGGAAAAGGTGTGCAAATCTTATTTATCTGAACTAAAATATCTTACAAAACATAATTCTAAGAGCAACTCCAATAAG 2493 0.4252 MFLLYYEDYTVKMANNSQPPSMQLLFAVPFVNYYFLLSYGNILQVCITLRTPYLQFRPVIQAQQGQPFAPMASQQFGLAGHAIPSSNVAMPVGQSXQLQYSQPMQQLPPRHIQPGQPAPSSQPTVPHLSSHMPSLAVSAATSHSSYTFQPPYSQQQDNVNAMAQYQPSGQMHAPPAGQPWVSSVSQSAATVTPVQQAGVQSSGTPSTDSATSAPNQQSASDWQEHTAADXRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSSDGRKYYYNKVTQQSTLVPIHEGTKLLATWLVNSLKAANQGMQLETSDTSNTAVSSAAPSTSSFCHTNCIINWSSAAVGSGLFKWWTELSTLVTASTTVAGPANPLDTTTPSRYFDCTTPGCAFCCYLAGNQKGVPVAGKVNVTLPEEKANDKETFAYANKMEAKIAFKALLESANVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKKAREEFTKMLEVRVQGANFIHEIEEKENAAEEHRRNLAEYRKFLESCDYVKVHSPWRKVQDRLEDDDRYLRLEKIDRLLVFQDYIRELEKEEEEQKRVQKERVRRGERKNRDAFRKLLEEHVAAGILNAKTQWREYCLKVRDLPQYQAVASNTSGSTPKDLFEDVVEDLENQYHEDKTLVKDIIKSGKITVVSTSVFEEFKAAILEEGSCETISEINLKLIFEDLLERAKEKEEKEAKKRQRLADDLTNLLYTFKDITTSSTWEDCKPLVEETQEYRSMGDENYSREVFEEYITYLKEKAKEKERKREEEKVCKSYLSELKYLTKHNSKSNSNK 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4130 831 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 50 508 IPR039726 GO:0045292
Amo16g4130 831 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 514 812 IPR039726 GO:0045292
Amo16g4130 831 MobiDBLite consensus disorder prediction 99 225 - -
Amo16g4130 831 Gene3D FF domain 731 804 IPR036517 -
Amo16g4130 831 Coils Coil 477 500 - -
Amo16g4130 831 ProSiteProfiles WW/rsp5/WWP domain profile. 216 249 IPR001202 GO:0005515
Amo16g4130 831 SMART ww_5 258 289 IPR001202 GO:0005515
Amo16g4130 831 SMART ww_5 217 249 IPR001202 GO:0005515
Amo16g4130 831 ProSiteProfiles FF domain profile. 429 483 IPR002713 -
Amo16g4130 831 MobiDBLite consensus disorder prediction 122 167 - -
Amo16g4130 831 ProSitePatterns WW/rsp5/WWP domain signature. 222 247 IPR001202 GO:0005515
Amo16g4130 831 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 50 508 - -
Amo16g4130 831 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 514 812 - -
Amo16g4130 831 Coils Coil 578 598 - -
Amo16g4130 831 SUPERFAMILY FF domain 597 672 IPR036517 -
Amo16g4130 831 CDD WW 263 284 IPR001202 GO:0005515
Amo16g4130 831 SUPERFAMILY FF domain 522 591 IPR036517 -
Amo16g4130 831 SUPERFAMILY FF domain 738 799 IPR036517 -
Amo16g4130 831 Coils Coil 520 540 - -
Amo16g4130 831 MobiDBLite consensus disorder prediction 179 224 - -
Amo16g4130 831 Gene3D FF domain 517 594 IPR036517 -
Amo16g4130 831 Gene3D FF domain 595 676 IPR036517 -
Amo16g4130 831 Gene3D FF domain 429 484 IPR036517 -
Amo16g4130 831 SUPERFAMILY WW domain 250 284 IPR036020 GO:0005515
Amo16g4130 831 SMART FF_2 429 483 IPR002713 -
Amo16g4130 831 SMART FF_2 530 584 IPR002713 -
Amo16g4130 831 SMART FF_2 604 665 IPR002713 -
Amo16g4130 831 SMART FF_2 737 792 IPR002713 -
Amo16g4130 831 Gene3D - 215 258 - -
Amo16g4130 831 Gene3D - 259 285 - -
Amo16g4130 831 Pfam FF domain 533 581 IPR002713 -
Amo16g4130 831 Pfam FF domain 431 480 IPR002713 -
Amo16g4130 831 Pfam FF domain 606 661 IPR002713 -
Amo16g4130 831 SUPERFAMILY FF domain 421 483 IPR036517 -
Amo16g4130 831 ProSiteProfiles FF domain profile. 602 665 IPR002713 -
Amo16g4130 831 SUPERFAMILY WW domain 221 255 IPR036020 GO:0005515
Amo16g4130 831 CDD WW 220 249 IPR001202 GO:0005515
Amo16g4130 831 ProSiteProfiles FF domain profile. 530 584 IPR002713 -
Amo16g4130 831 Coils Coil 719 747 - -
Amo16g4130 831 Pfam WW domain 220 247 IPR001202 GO:0005515
Amo16g4130 831 Pfam WW domain 263 284 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4130 Amo-Chr16 153908049 153918256 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4130 K12821 - vvi:100243779 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4130 16 153908049 153918256 Amo16g4130 16 153908049 153918256 ECH