Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4128 ATGGATCTTGGTGTGGTGGGTTCAGAAGCTGGGTTTGTTCCATTTGGATCTGGGTTCGTTAAGCATCAAAGATCTGAAGAGGAGGTGAGTAATAATGATCATAATAATAGAAGAGGGGCAAAACTGTCAAAGGTTAATATTACTACTGGTGATGATGATGATGTCATCACAACAACAACATCAAAGGGAATGTTGTTTTTTCAGAATCATCAGAGGAACAACAACAACAATAGCTCTTGTTGTAATGTGTTGTTGAGATCTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGGAAATGACAATGTTGCCATTGCTCTCTTCAAACAAGAAGGAGAAGAGAAGATGCTGAGTTTCTCAACAACACCAACACCAAAGTCAGAGACTTTGATTGTGGAAAAGGCTTCTTCAAATGCTACATTGCACACTTCTTATCACCCTTTCTCTAGTTACAACATAAATAATAATGCAGGTTACAATAACAGTAATTGGGGAATGATGATGATGGGAAATAGTAGTAGTAATAATAATGTGGGAAGAGTGGTAGGAGCTGCATTATTCACTCCCTCACAGTGGATGGAGCTGGAGCACCAAGCACTCATTTACAAGTATATCACTGCAAATGTTCCTGTTCCTTCTCATCTTATTCCAATCACTAAAGCCCTTCATTCCACTTCTCCATTCTCTAACTTTCCTAATCCACTTCTTAGACCCAATCCTTTGGGATGGGGAGGTTTCCATTTGGGATTCTCGAGCAGCACCGATCCGGAGCCAGGTCGGTGCAGGAGAACCGATGGGAAGAAATGGCGGTGCTCGAGGGACGCAGTTGTGGACCAGAAGTACTGCGAGCGTCACATGAACCGAGGCCGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCATGCTGCTGCCATCACCACCACCACCACCACAACCACCACTTCTAACTCAAAGCTATTGTTGCCTAACAGCAACAATTCAAGTTCTTCATTCTCCATTGTGGGGAACACTGCTTCCAACAACAATAGCAACACTATTTCATTTGGAAACTGCCATGAACACAAGAATGTTATTCAGCAGCAGCAGCCTGTTGCATCTGATGCTTCTGCTGCTAATAATATCAGCAGGATGTTTATGAAGAAAGAGAACAATAATGCAAATGAGAGTTGTTCACTACTTCCAATGCTACCACCAAAGGAAAACCCATTCATGATTCATAACAACCACCATGAATTTGGAGTTGTGACTTGTGATTCACTCCTTAACCCTTCTTCCAATAATAAGAGCAATGATTCACAAAACAATTCCCTAAGGCATTTCATTRATGAGTCAACACARTTGTCAATCTCAATCCCAAATCATCAATTCATGCCAACCAATGAGAAAGTGACACTCTCACCTTTAAGGGTATCATCATCAAGGGAGTTGGAATTGGAATTAGTAGACCCTATTCAAATGGGGTTAGGAGTTGGAATTGGTGTCAACAACAACAACAACAACATTGTTAGACAACCAAATTGGATTCCAATTTCATGGGAGAGTTCAATGGGTGGTCCACTTGGTGAGGTTCTCGACCTTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAGGGATCTTTGAACCTTATTAGTAGTGATGGGTGGGACAATAGTCCTTCAATAGGGTCATCACCAACTGGGGTGTTGCAAAAGACAACAGCATTTGGTTCACTCTCTAATAGCAGTGCTGGGAGTAGTCCAAGGGCAGTAGACAACAACAAAGGAGGGGCAATCTTGTAA 1818 0.3993 MDLGVVGSEAGFVPFGSGFVKHQRSEEEVSNNDHNNRRGAKLSKVNITTGDDDDVITTTTSKGMLFFQNHQRNNNNNSSCCNVLLRSNNNNNNNNNNNNNNNNGNDNVAIALFKQEGEEKMLSFSTTPTPKSETLIVEKASSNATLHTSYHPFSSYNINNNAGYNNSNWGMMMMGNSSSNNNVGRVVGAALFTPSQWMELEHQALIYKYITANVPVPSHLIPITKALHSTSPFSNFPNPLLRPNPLGWGGFHLGFSSSTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGHAAAITTTTTTTTTSNSKLLLPNSNNSSSSFSIVGNTASNNNSNTISFGNCHEHKNVIQQQQPVASDASAANNISRMFMKKENNNANESCSLLPMLPPKENPFMIHNNHHEFGVVTCDSLLNPSSNNKSNDSQNNSLRHFIXESTQLSISIPNHQFMPTNEKVTLSPLRVSSSRELELELVDPIQMGLGVGIGVNNNNNNIVRQPNWIPISWESSMGGPLGEVLDLNNNNNNNNNNNNNNNNKGSLNLISSDGWDNSPSIGSSPTGVLQKTTAFGSLSNSSAGSSPRAVDNNKGGAIL* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4128 605 SMART QLQ_2 190 226 IPR014978 GO:0005524|GO:0005634|GO:0006355
Amo16g4128 605 MobiDBLite consensus disorder prediction 531 595 - -
Amo16g4128 605 PANTHER - 449 596 IPR031137 GO:0005634|GO:0006351|GO:0032502
Amo16g4128 605 PANTHER - 10 437 IPR031137 GO:0005634|GO:0006351|GO:0032502
Amo16g4128 605 Pfam WRC 261 303 IPR014977 -
Amo16g4128 605 ProSiteProfiles QLQ domain profile. 191 226 IPR014978 GO:0005524|GO:0005634|GO:0006355
Amo16g4128 605 MobiDBLite consensus disorder prediction 78 106 - -
Amo16g4128 605 PANTHER GROWTH-REGULATING FACTOR 9 10 437 - -
Amo16g4128 605 MobiDBLite consensus disorder prediction 526 605 - -
Amo16g4128 605 Pfam QLQ 192 221 IPR014978 GO:0005524|GO:0005634|GO:0006355
Amo16g4128 605 MobiDBLite consensus disorder prediction 308 346 - -
Amo16g4128 605 ProSiteProfiles WRC domain profile. 260 304 IPR014977 -
Amo16g4128 605 PANTHER GROWTH-REGULATING FACTOR 9 449 596 - -
Amo16g4128 605 MobiDBLite consensus disorder prediction 288 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4128 Amo-Chr16 153887247 153892264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g4128 115 582 GRF Transcription Factor Family AT2G22840 38.340 3.46e-73 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Amo16g4128 WRC 5.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4128 - - aip:107605578 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4128 16 153887247 153892264 Amo16g4128 16 153887247 153892264 ECH