Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4123 ATGAAGTCTTTCTTGAATGATGGAAACAATACTACTACTGCTACTACTACTAATCATGATGATGATAGTAACAATCATAACTGGTTGATGGGTTTCTCTCTCTCACCCCACCACCACCACAACATGAAAATGGAGGTTCCCAATGATCATAATCATAATCATCATCATCATCATCATCACCATCAGTATTATCATCATCTTCATCATCCTTCAAGCACTGCCTCAACAACAAGTAGCTTATTCTACTTGTCACCTTCACAGTTGAATAATCCTTCTTCAACAATGTGTTATGCTGAAAACCCTTCTCCCTTTCATTCTTCTCCTTCTCTGGCTATGATGCCACTCAAATCTGATGGCTCACTCTGCATAATGGAAGCTCTCACTACATCACAAACCCAAGTGATGGTGCCAAGTTCTTCATGTTCATCTCCAAAGCTTGAGGACTTTCTAGGTGGTGCAACAATGGGAGCTCATGAATATGGTGAACATGAAAGAGAAGCAATGGCTCTAAGCTTAGACAGCATTTACTATAACAATAGCCATCATCATCATCATCAAAATTCTGAGGCTGAAAACAACAACAGACAACAACATTGTTCTTCTAATTCTTCTTTGGACCTTATTCTCTCAGACCCTTTTAAGCAACAAGGGCATAATAGTAATAATCATCATCATGAACATGATCATGATGTGAATCAATACTATTCAGCACTTGGCTGCAGCAATGATGGTTCTACTAACATTCTACCATTTGTTGAAGAAGAAGAAGAAGAAGAAACAACAAAGGAACCTCATCATCAAATGCATCAAGAACAAGAGAATAATAATTGCTTCATCAGAAACTGGGTTAATGGAAATAATAATAATAATAATAATAATAATAATAATGGAATGGTGGAAAGTGTTAATGTGAATGTTAATGGTGGAGGTGGGAATTTGAAGACTTTAAGTCTTTCAATGAGTCCTGGTTGTTCATCTACTTCTCAATCATCATCAAGCCATGTAAGTGTTTCAACAACTACTCATAATCATAATCAGATCTCAGCAGGTTCTTCTTCTTCAAATTCTTGCAAGGCCATGGTGGAAGTTGCAAAGAATAATAAGAGAGGACACAATAATAGTAGTAAGCAAACTGTTCATAGGAAATCCATTGAGACATTTGGTCAAAGAACTTCACAGTACAGAGGTGTCACAAGGCATAGATGGACCGGCAGATATGAAGCACATTTGTGGGATAATAGTTGCAAAAAAGAAGGGCAAACTAGGAAAGGAAGACAAGGTGGCTATGATATGGAAGAAAAAGCTGCAAGGGCTTATGATCTTGCAGCCCTTAAGTATTGGGGACCTTCAACACACATAAACTTTCCGCTTGAAAACTACCAAAATGAACTTGAAGAAATGAAGAACATGAACAGGCAGGAATATGTTGCACATTTGAGAAGAAAAAGTAGTGGATTTTCAAGGGGAGCTTCAATGTATAGAGGGGTGACAAGGCTGACTTTGGACAGTACTCAAGAAGAAGCAGCAGAAGCATATGATGTGGCTGCAATCAAATTCCGTGGGGTGAATGCAGTCACAAACTTTGACATTTCAAGATATGATGTTGAAAGGATCATGGCTAGTAACACCCTACTTGCCGGAGAATTGGCCAGAAAGAACAACAACGAGCAGCCGAAGGCGATCGAGGCGGCGCCGGCACCGGCACCGGCAACAACCCTAGAGTACAATGTTGTAACAAGCCACATCAACAAGAAGGAGTTGGTAGAAGTTGAAGGTTGTAACAACAACAACATTGAAAATGGTTCAGATGAATGGAAGAAGATTGGATTTAATGATGATTATAGAAATTGTCAAACTTTCTGTGGTGGTGGGGCCCTACAAGATCTAATTGGCATTCAAAACCCTAATATGGGAGGAGGGACTCATTTTTCAAACCCATCTTCACTAGTGACAAGTTTGAGCAACTCATCAAGAGAAGGTAGCCCTGTTCACAACATGAACAAGAACAACAATAGTAGTCATCATCAAAATGTGTTTCATCAAAAGGTTAATAATAATAATGTTGTTAGCCCTATTATTGTTGCCAATAATACTAGTACTACTAGTGTTGTTAGTTCTTGGTTCCCTTCACCACCTCCTCAAATTAGGTCTACTATGTCTCCCATGCCCATTTTTGCGGCTTGGACTGAACCCTAG 2196 0.3907 MKSFLNDGNNTTTATTTNHDDDSNNHNWLMGFSLSPHHHHNMKMEVPNDHNHNHHHHHHHHQYYHHLHHPSSTASTTSSLFYLSPSQLNNPSSTMCYAENPSPFHSSPSLAMMPLKSDGSLCIMEALTTSQTQVMVPSSSCSSPKLEDFLGGATMGAHEYGEHEREAMALSLDSIYYNNSHHHHHQNSEAENNNRQQHCSSNSSLDLILSDPFKQQGHNSNNHHHEHDHDVNQYYSALGCSNDGSTNILPFVEEEEEEETTKEPHHQMHQEQENNNCFIRNWVNGNNNNNNNNNNNGMVESVNVNVNGGGGNLKTLSLSMSPGCSSTSQSSSSHVSVSTTTHNHNQISAGSSSSNSCKAMVEVAKNNKRGHNNSSKQTVHRKSIETFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNELEEMKNMNRQEYVAHLRRKSSGFSRGASMYRGVTRLTLDSTQEEAAEAYDVAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARKNNNEQPKAIEAAPAPAPATTLEYNVVTSHINKKELVEVEGCNNNNIENGSDEWKKIGFNDDYRNCQTFCGGGALQDLIGIQNPNMGGGTHFSNPSSLVTSLSNSSREGSPVHNMNKNNNSSHHQNVFHQKVNNNNVVSPIIVANNTSTTSVVSSWFPSPPPQIRSTMSPMPIFAAWTEP* 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4123 731 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 25 703 - -
Amo16g4123 731 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 25 703 - -
Amo16g4123 731 MobiDBLite consensus disorder prediction 181 201 - -
Amo16g4123 731 ProSiteProfiles AP2/ERF domain profile. 459 529 IPR001471 GO:0003700|GO:0006355
Amo16g4123 731 MobiDBLite consensus disorder prediction 1 24 - -
Amo16g4123 731 PRINTS Ethylene responsive element binding protein signature 394 405 IPR001471 GO:0003700|GO:0006355
Amo16g4123 731 PRINTS Ethylene responsive element binding protein signature 511 531 IPR001471 GO:0003700|GO:0006355
Amo16g4123 731 Coils Coil 457 477 - -
Amo16g4123 731 MobiDBLite consensus disorder prediction 320 356 - -
Amo16g4123 731 Pfam AP2 domain 393 448 IPR001471 GO:0003700|GO:0006355
Amo16g4123 731 MobiDBLite consensus disorder prediction 52 67 - -
Amo16g4123 731 SUPERFAMILY DNA-binding domain 503 531 IPR016177 GO:0003677
Amo16g4123 731 CDD AP2 392 456 IPR001471 GO:0003700|GO:0006355
Amo16g4123 731 MobiDBLite consensus disorder prediction 48 71 - -
Amo16g4123 731 ProSiteProfiles AP2/ERF domain profile. 393 456 IPR001471 GO:0003700|GO:0006355
Amo16g4123 731 SUPERFAMILY DNA-binding domain 392 458 IPR016177 GO:0003677
Amo16g4123 731 SMART rav1_2 492 535 IPR001471 GO:0003700|GO:0006355
Amo16g4123 731 SMART rav1_2 393 462 IPR001471 GO:0003700|GO:0006355
Amo16g4123 731 Gene3D AP2/ERF domain 468 531 IPR036955 GO:0003700|GO:0006355
Amo16g4123 731 Gene3D AP2/ERF domain 392 458 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4123 Amo-Chr16 153782929 153787508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g4123 291 555 AP2-EREBP Transcription Factor Family AT4G37750 61.409 2.09e-105 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo16g4123 AP2 5.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4123 K09285 - gmx:100798179 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4123 16 153782929 153787508 Amo16g4123 16 153782929 153787508 ECH
Amo16g4123 16 153782929 153787508 Amo08g0865 08 14875839 14878869 PCT
Amo16g4123 16 153782929 153787508 Amo17g2953 17 131848893 131852093 PCT
Amo08g0865 08 14875839 14878869 Amo16g4123 16 153782929 153787508 PCT
Amo17g2953 17 131848893 131852093 Amo16g4123 16 153782929 153787508 PCT