Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4120 ATGGGGGGTCATGAGAATGCAATGGGGTTTCATCATGGAAATGAGAGCATTCTGACAAATAATGTTAATGTCTCAGAAATGGATATGAGTTCTTCTATGTCATTGGCTAAGTCTTCTTCTTCAGATGTTGTTGTACCTAATAGTAACCCTTTTCTTGCTTCTTCTTCTTCTTGGGATCCAATTGTTTCCTTAAGCCAATCTCAAACTTTTGGAGGGTCATCAATGGTTACTACTCACAATAGTGATTTTGGAAATTCTTCATCTTACCCTTTTGTTCAATATATGTCTGACTCAACCAATCTTGAGGGCATTATGGTCCACAAAATTCCATCTTTTGGAAGTGGAAACTTCTCAGAAATTGTTGGATCCTTTTGTCAAGAAGGGTCTTCTGATATACCTAACATGGGGTTTAGACCAAGTTATAATCATGGCAATGATGCTGGAACCGAAAGAGCTCCAATGAATGAACAATCTCAGGTTGAGGACTCAATTACTGAAGATGGTGCACCAGGAACTGCACCTAGTGGAAATCAAAGAAAGCGCATGCTTGATCATGATTCTTCTTTCAGTCCAAACAAGAATGCTGGTGGCGATGAACTGAAAGACTCTCCAAGGACGATATCTGATGGTGCTAAAGAACATGAAAAGAAGGCGAAAGTCGAGCAGAATGTGAGTGCTGATTTGCGAGGCAAGCAACCGGCAAAGCAATCAAAAGAAAATTCTCCAAGTGGAGAAGCTCCTAAAGAAAATTTCATCCATGTGAGAGCAAGAAGGGGCCAAGCTACAAACAGTCACAGCCTTGCAGAAAGGGTGAGAAGAGAAAAGATTAGTGAGAGAATGAGATTGCTCCAAGAACTTGTTCCAGGGTGCAACAAGATAACTGGCAAAGCAGTAATGCTGGATGAGATTATAAACTATGTGCAGTCACTGCAGCAACAAGTTGAGTTTTTGTCCATGAAACTTGCCACAGTGAACCCGGAACTGAATTTTGACGTAGAACGGATCCTGTCGAAGGAAATTCTTCAATCGCGCTTAGGACATGGAATTGTTGGATATGGTGTTGGTATGAGCTCCCCTCACCCATTCTCCAATGGAAGTTTTCAAGGAAACATGGCTGGCATGCCTAGTACATCAACACAATTCCCTCCTTTGCCTCAGGGTGTTTTGGACCATGAGTTCCAAAGTCTTTATGGAATGGGGTATGATCCTAATACAGCACTTGACAATTTGGGACCAAATGGAAGATTGAAGACAGAATTATAG 1263 0.4149 MGGHENAMGFHHGNESILTNNVNVSEMDMSSSMSLAKSSSSDVVVPNSNPFLASSSSWDPIVSLSQSQTFGGSSMVTTHNSDFGNSSSYPFVQYMSDSTNLEGIMVHKIPSFGSGNFSEIVGSFCQEGSSDIPNMGFRPSYNHGNDAGTERAPMNEQSQVEDSITEDGAPGTAPSGNQRKRMLDHDSSFSPNKNAGGDELKDSPRTISDGAKEHEKKAKVEQNVSADLRGKQPAKQSKENSPSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERILSKEILQSRLGHGIVGYGVGMSSPHPFSNGSFQGNMAGMPSTSTQFPPLPQGVLDHEFQSLYGMGYDPNTALDNLGPNGRLKTEL* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4120 420 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 258 328 IPR036638 GO:0046983
Amo16g4120 420 SMART finulus 266 316 IPR011598 GO:0046983
Amo16g4120 420 Gene3D - 257 331 IPR036638 GO:0046983
Amo16g4120 420 MobiDBLite consensus disorder prediction 151 165 - -
Amo16g4120 420 Pfam Helix-loop-helix DNA-binding domain 263 311 IPR011598 GO:0046983
Amo16g4120 420 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 16 420 - -
Amo16g4120 420 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 420 IPR024097 GO:0006355
Amo16g4120 420 MobiDBLite consensus disorder prediction 135 248 - -
Amo16g4120 420 MobiDBLite consensus disorder prediction 198 224 - -
Amo16g4120 420 CDD bHLH_AtBPE_like 250 335 - -
Amo16g4120 420 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 260 310 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4120 Amo-Chr16 153735533 153739743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g4120 1 420 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 41.589 2.29e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo16g4120 HLH 4.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4120 - - gmx:100794464 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4120 16 153735533 153739743 Amo16g4120 16 153735533 153739743 ECH