Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4114 ATGAAGGACGAAACAGGTGATGGAGAGAACGATAAATTGCAGGATATTAAGCTTTGGGGAGTTTTTCTCTTCGGTTTGATTGGCGCCACCGCTTCAAGAATCGCACTGTCCCGGTCGCAATCATCGTGGAAAGGAGGGAGTGGCAGTTCTTTCCGATCAGCATTTCAAGAGGAAGCATGGAAGAGGTACAACAAACGGTTGCGAGAGGAGTACGAGGAGGAGATGGAGAGGGTGGAACGAATAAAGCATATGCAGAGTGTGTTTAGCAGAGAAAGAAATAAGTATAAAAGAAGCTATGAGCAGTGGAGGGAAAATGGTCCTGGTGCATATCATCAACATTTCCAGAGAGATGATTGGTATTGGAAGGCAGACACATCCTTCAGAGACCAGAGGACTAATTATCGAGATACTCCGAGGGAGAGTGCATATTATTCATTATCACATCACTACTCAGTTCTGGGTCTTGACAGGTTTAGAACAACACCATATACAGATGCCGAGATCAAGGTAGCATTTAGGATGAAGGCGAAGCAGTATCACCCTGATCAAAACCAGGATAATAGAGAAGCTGCTGAGGCTAAGTTCAAAGAAGTAATGTGTTCATATGAAGCCATTCAAAAAGAAAGGAAGAACCAGAATCTGTAA 645 0.4372 MKDETGDGENDKLQDIKLWGVFLFGLIGATASRIALSRSQSSWKGGSGSSFRSAFQEEAWKRYNKRLREEYEEEMERVERIKHMQSVFSRERNKYKRSYEQWRENGPGAYHQHFQRDDWYWKADTSFRDQRTNYRDTPRESAYYSLSHHYSVLGLDRFRTTPYTDAEIKVAFRMKAKQYHPDQNQDNREAAEAKFKEVMCSYEAIQKERKNQNL* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4114 214 Pfam DnaJ domain 149 212 IPR001623 -
Amo16g4114 214 PRINTS DnaJ domain signature 172 187 IPR001623 -
Amo16g4114 214 PRINTS DnaJ domain signature 190 210 IPR001623 -
Amo16g4114 214 SUPERFAMILY Chaperone J-domain 145 212 IPR036869 -
Amo16g4114 214 Coils Coil 188 208 - -
Amo16g4114 214 ProSiteProfiles dnaJ domain profile. 148 210 IPR001623 -
Amo16g4114 214 PANTHER HEAT SHOCK PROTEIN-BINDING PROTEIN 7 214 - -
Amo16g4114 214 SMART dnaj_3 147 210 IPR001623 -
Amo16g4114 214 CDD DnaJ 149 198 IPR001623 -
Amo16g4114 214 Gene3D DnaJ domain 148 214 IPR036869 -
Amo16g4114 214 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 7 214 - -
Amo16g4114 214 Coils Coil 57 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4114 Amo-Chr16 153667629 153670116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g4114 104 213 Miscellaneous Gene Families AT5G49580 34.545 1.14e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4114 - - ahf:112697713 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4114 16 153667629 153670116 Amo16g4114 16 153667629 153670116 ECH
Amo16g4114 16 153667629 153670116 Amo08g0871 08 14945392 14948107 PCT
Amo16g4114 16 153667629 153670116 Amo17g2947 17 131775140 131778160 PCT
Amo08g0871 08 14945392 14948107 Amo16g4114 16 153667629 153670116 PCT
Amo17g2947 17 131775140 131778160 Amo16g4114 16 153667629 153670116 PCT