Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4109 ATGGGGAGAGCTCCTTGCTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGTCTCCTGAAGAAGATGCTAAGCTCAAATCATACATACAACAACATGGCACTGGTGGCAATTGGATTGCTTTGCCTCCAAAAATTGGATTGAAGCGTTGTGGGAAGAGTTGCCGTCTAAGGTGGTTGAACTATCTTCGCCCTAATCTCAAGCATGGTGATTTCTCTCAAGAAGAAGACAACATTATTTGTAGCCTCTATGTTAGTATTGGAAGCAGGTGGTCAGTTATTGCTGCTCAATTACCAGGAAGAACTGATAATGACATAAAGAACTATTGGAACACAAGGCTCAAAAAGAAGCTTCTTGGCAATAACAAGAACCGCCGCAACAAAGAACAGCAACAATTACAAGCATGTAGCAATAATAATGGAATCAACAAGCAACAAGAAACATCATCAATTAATGGAGGGAGTGTTATTATTGGTGATGATTCCTTATCTTCCTTATTGGTTCATGAAAATAGTAGTACTACTCATCAACAACAACAACAACAATGTTATTGGCCACACTTCATGCCAGTGTTGCCAATACCAAATTTGCCATATAGCACAACAAATAATAACCAACAATTCTACTTAGGATCTTCTTTCAATGACCAAGATTCCATCAAGAAACTACTTATCAAGCTTGGAGGGAGATTCCATAATGATGTTGATTATCATAATTACCATCCTACCCTTGGTGATGGATTATTGAATCATCTTCATCAATCACAAGGTACTACTACTTATTATTCTAATAATTCAACACAACAACAAGTACTTTATCATCAAGAACAAATACAATTTGATGATGGTAATAATGGACTTCATCATGATGAAATGGTGCAAAGAAAAGGAAACCTCAACAATGAAATTGAAGAAGAAATGGTGGGTAATACTAATTTTATTCCACAAAGATTATTAAATAATGGGTTGGGGTTCTTCCATGGAGACATGGTTTTCAGTGAGGATAAGATCATAATAGGCTCTACTACTACTAGGCCTAATTGGGGTGAGAATAGTAGTGGCAATTCAGTAATTTACCACCCTCTTATTTCTTCTTCAAATTACCAAGAAGATCAAGGTGTAAGGCCATCAGAAGAATGTGCTTTGCAAGAGTATAGCACTATAGCCACCATGAGGACCAATAGTAGCAATAGCATGCTTCATGTACAATAA 1209 0.3714 MGRAPCCDKANVKKGPWSPEEDAKLKSYIQQHGTGGNWIALPPKIGLKRCGKSCRLRWLNYLRPNLKHGDFSQEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGNNKNRRNKEQQQLQACSNNNGINKQQETSSINGGSVIIGDDSLSSLLVHENSSTTHQQQQQQCYWPHFMPVLPIPNLPYSTTNNNQQFYLGSSFNDQDSIKKLLIKLGGRFHNDVDYHNYHPTLGDGLLNHLHQSQGTTTYYSNNSTQQQVLYHQEQIQFDDGNNGLHHDEMVQRKGNLNNEIEEEMVGNTNFIPQRLLNNGLGFFHGDMVFSEDKIIIGSTTTRPNWGENSSGNSVIYHPLISSSNYQEDQGVRPSEECALQEYSTIATMRTNSSNSMLHVQ* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4109 402 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Amo16g4109 402 CDD SANT 71 113 IPR001005 -
Amo16g4109 402 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Amo16g4109 402 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Amo16g4109 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Amo16g4109 402 Gene3D - 7 68 - -
Amo16g4109 402 SMART sant 13 64 IPR001005 -
Amo16g4109 402 SMART sant 67 115 IPR001005 -
Amo16g4109 402 CDD SANT 16 62 IPR001005 -
Amo16g4109 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Amo16g4109 402 PANTHER OS09G0431300 PROTEIN 1 256 - -
Amo16g4109 402 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Amo16g4109 402 Gene3D - 70 145 - -
Amo16g4109 402 MobiDBLite consensus disorder prediction 118 144 - -
Amo16g4109 402 PANTHER OS09G0431300 PROTEIN 1 256 - -
Amo16g4109 402 MobiDBLite consensus disorder prediction 124 144 - -
Amo16g4109 402 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4109 Amo-Chr16 153599485 153601387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g4109 1 225 MYB Transcription Factor Family AT3G49690 57.080 5.73e-80 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo16g4109 Myb_DNA-binding 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4109 K09422 - gmx:100800290 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4109 16 153599485 153601387 Amo16g4109 16 153599485 153601387 ECH
Amo16g4109 16 153599485 153601387 Amo08g0875 08 15012018 15013764 PCT
Amo08g0875 08 15012018 15013764 Amo16g4109 16 153599485 153601387 PCT