Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4104 ATGAAGAGTTTGTGTGCTTGCTTCTACACAAGCAGTGTCTTCAACTCTCACTGGAACCATAACCATTCTCATTCTCAATCTCAGATCATGGCGGGAAGCATCTCTGGTCCGAGTGGGGGCAATGCTGCTAACATTTTACTAAATCATGACTTCTCCGGAGGGTTGGATTCTTGGCATGTCAATTGCTGCGACGGCTATGTAGTTTCGGCTGAAGAAGTTTCCCAGTTAGGAATATCAATGGAGACAGATGGTAATTGTGCTGTTATCACCAGCCGAAAAGAATGCTGGCAAGGTCTCGAGCAAGACATCACAAGCAGAGTTTCCATTGGCTCCACTTACATAGTTTCAGCTCTTGTTGGAATATCCGGCCTGTCTCAGGGATCTAATGATGTCCAAGCTACCCTGAAACTTGAATATCACAATTCGGCTACTAGTTACTTGTTCATTGGAAGAACTTCTGTTACTAGGGGAAACTGGAAAAAGCTGGAAGGTACATTTTCATTGTCGACTATGCCAAAACGAGTTGTATTTTATTTGGAAGGACCTGCTCCTGGAGTTGATATACTTATTCGCTCCGTAGAGATCGGCTGTTCAAATCCTAACAACAATATTGCAAGAACTGGATGTGTTTCTACTGGAGAAGATAACATCATAATAAACCCGCAATTTGATGATGGCTTGAACAATTGGTCCGGAAGAGGCTGTAAGATTGCATTGCATGATTCCATGGGAAATGGGAAAATTCTACCTAAGTCTGGCAAGTTCTTTGCATCAGCGACTGAACGTACGCAAAGCTGGAATGGAATTCAGCAGGATATCACCGGAAGAGTGCAGCGCAAGCTCGCCTACGAGGTCACTACTTCAGTTCGAATATTTGGAAACAATGTCACTACTGCTGATGTTCGCGCTACTTTGTATGTCCAAACATCAGATCTTCGAGACCAGTACATCGGCATTGCCAATGTGCAGGCAACAGACAAAGATTGGATTGATATGCAGGGAAAGTTCCTTCTAAATGGATCCCCATCAAAAGTGGTAATTTATTTAGAGGGTCCTCTGCCGGGTACTGACATTCTTGTTAATAGTTTGGTTGTAAAGCGTGCGCCTAAGACACCTCCATCAACACCACCGGACATAAAGGGTGTTGCTTTTGGGGTTAATGTAATTGAGAACAGCAATCTGGCTGATGGCACTAATGGATGGTATCCCCTTGGTAACTGCACATTGAGTGTTAAAACCGGCTCGCCACATATAATGCCGCCGATGGCAAGAGACTCTCTAGGACCACATGAGCTTCTAAGTGGACGCTACATACTTGTAACAAACCGCACACAAACATGGATGGGTCCTGCTCAGACTATCACTGATAAATTGAAACTCTTTGTGACTTATCAAGTATCGGCTTGGGTTCGGCTTGGTTCGGGATCATCCGGGCCACAGAATGTGAATGTTGCCCTTGGTGTTGACAACCAGTGGGTCAATGGAGGACAAACTGAGGTATCCGATCAAAGATGGCATGAAATCGGTGGGTCGTTTAGAATCGAAAAGCAGCCATCAAAGGTTATGGTTTATATCCAAGGTCCTGCTTCAGGTGTTGACTTAATGGTTGCTGGACTTCAAATTTTTCCTGTTGATAGACATGCAAGGTTTAAATATCTAAAGTCTCAAACAGACAAGATCCGAAAGCGTGATGTTACCCTGAAATTCTCCGGACTGGATGCAAGCAACTACTCGAAAACCTCAGTGCAAGTCAGACAAATTCAGAATAATTTTCCAGTTGGAACATGCATCAGCAGGATGAACATTGACAATGAGGATTTTGTAGACTTCTTTGTGAAACATTTTAACTGGGCTGTGTTTGGTAATGAGTTGAAATGGTACTGGACCGAGCCGCAACAGGGGAATTTCAACTACAAGGATGCAGATGATCTCTTAAACTTGTGTCAGAAGAACAAGATAGAAACTCGCGGCCATTGTATCTTCTGGGAAGTGGATGGAACCGTCCAGCAATGGATTAAAGCGCTGAACAAAACTGACCTCATGGCGGCCGTCCAGAACAGATTAAACGGCCTGCTTACTCGGTATAAAGGCAAGTTCAATCACTATGATGTTAACAATGAAATGCTGCATGGTTCATTTTACCAGGACAGGTTAGGTAAGGACATAAGGGCCAACATGTTTAAGACTGCGAATCAACTTGATCCGGCCGCTACCCTTTTCGTGAATGATTATCACGTGGAAGATGGATGTGACACCAGATCATGTCCGGAAAAATACATTGAACATATTCTTGATTTGCAAGAACAGGGGTCCCCTGTTGGTGGAATTGGAATTCAAGGCCATATAGATAGTCCGGTTGGGCCTATCGTTTGTTCATCCCTTGATAAACTGGGAATTCTTGGCTTACCTATATGGTTCACCGAGCTAGATGTGTCGTCGACTAACGAATATGTTAGAGCAGACGATTTGGAAGTTATGTTGAGGGAAGCCATGGCTCACCCGGCCGTCGAAGGCCTAATGCTGTGGGGATTTTGGGAGTTGTTCATGAGCCGGGACAACTCTCACTTGGTTAATGCAGAAGGTGAAATCAATGAAGCTGGAAAAAGGTTCCTTGCTCTTAAGCAAGAATGGCTTTCTCATAGCCATGGAAATGTTGATCAGCAAGGTCAATACAACTTTAGAGGCTTTCATGGAACATACAAGGTTGATATTGTCATTGATACAAAGAAAGTTTCCAAGACCTTTGTCCTTGACAAGGGTGACTCTCCAATGGTGGTTTCCATAGACTTCTAA 2793 0.439 MKSLCACFYTSSVFNSHWNHNHSHSQSQIMAGSISGPSGGNAANILLNHDFSGGLDSWHVNCCDGYVVSAEEVSQLGISMETDGNCAVITSRKECWQGLEQDITSRVSIGSTYIVSALVGISGLSQGSNDVQATLKLEYHNSATSYLFIGRTSVTRGNWKKLEGTFSLSTMPKRVVFYLEGPAPGVDILIRSVEIGCSNPNNNIARTGCVSTGEDNIIINPQFDDGLNNWSGRGCKIALHDSMGNGKILPKSGKFFASATERTQSWNGIQQDITGRVQRKLAYEVTTSVRIFGNNVTTADVRATLYVQTSDLRDQYIGIANVQATDKDWIDMQGKFLLNGSPSKVVIYLEGPLPGTDILVNSLVVKRAPKTPPSTPPDIKGVAFGVNVIENSNLADGTNGWYPLGNCTLSVKTGSPHIMPPMARDSLGPHELLSGRYILVTNRTQTWMGPAQTITDKLKLFVTYQVSAWVRLGSGSSGPQNVNVALGVDNQWVNGGQTEVSDQRWHEIGGSFRIEKQPSKVMVYIQGPASGVDLMVAGLQIFPVDRHARFKYLKSQTDKIRKRDVTLKFSGLDASNYSKTSVQVRQIQNNFPVGTCISRMNIDNEDFVDFFVKHFNWAVFGNELKWYWTEPQQGNFNYKDADDLLNLCQKNKIETRGHCIFWEVDGTVQQWIKALNKTDLMAAVQNRLNGLLTRYKGKFNHYDVNNEMLHGSFYQDRLGKDIRANMFKTANQLDPAATLFVNDYHVEDGCDTRSCPEKYIEHILDLQEQGSPVGGIGIQGHIDSPVGPIVCSSLDKLGILGLPIWFTELDVSSTNEYVRADDLEVMLREAMAHPAVEGLMLWGFWELFMSRDNSHLVNAEGEINEAGKRFLALKQEWLSHSHGNVDQQGQYNFRGFHGTYKVDIVIDTKKVSKTFVLDKGDSPMVVSIDF* 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4104 930 ProSitePatterns Glycosyl hydrolases family 10 (GH10) active site. 801 811 IPR031158 -
Amo16g4104 930 Gene3D - 383 542 - -
Amo16g4104 930 Gene3D - 39 196 - -
Amo16g4104 930 Gene3D - 210 367 - -
Amo16g4104 930 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 204 929 - -
Amo16g4104 930 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 41 195 - -
Amo16g4104 930 SUPERFAMILY Galactose-binding domain-like 43 199 IPR008979 -
Amo16g4104 930 SUPERFAMILY Galactose-binding domain-like 385 545 IPR008979 -
Amo16g4104 930 PANTHER GLYCOSYL HYDROLASE 204 929 IPR044846 GO:0004553|GO:0005975
Amo16g4104 930 PANTHER GLYCOSYL HYDROLASE 41 195 IPR044846 GO:0004553|GO:0005975
Amo16g4104 930 Pfam Carbohydrate binding domain 43 184 IPR003305 GO:0016798
Amo16g4104 930 Pfam Carbohydrate binding domain 387 530 IPR003305 GO:0016798
Amo16g4104 930 Pfam Carbohydrate binding domain 215 352 IPR003305 GO:0016798
Amo16g4104 930 Coils Coil 856 876 - -
Amo16g4104 930 Pfam Glycosyl hydrolase family 10 587 844 IPR001000 GO:0004553|GO:0005975
Amo16g4104 930 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 578 873 IPR001000 GO:0004553|GO:0005975
Amo16g4104 930 SUPERFAMILY Galactose-binding domain-like 214 369 IPR008979 -
Amo16g4104 930 Gene3D Glycosidases 575 884 - -
Amo16g4104 930 SMART glyco_10 624 874 IPR001000 GO:0004553|GO:0005975
Amo16g4104 930 SUPERFAMILY (Trans)glycosidases 578 881 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4104 Amo-Chr16 153475716 153481124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g4104 39 930 Glycoside Hydrolase AT1G58370 69.754 0.0 1307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4104 - - lja:Lj0g3v0316669.1 1617.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4104 16 153475716 153481124 Amo16g4104 16 153475716 153481124 ECH
Amo16g4104 16 153475716 153481124 Amo08g0880 08 15140813 15144547 PCT
Amo08g0880 08 15140813 15144547 Amo16g4104 16 153475716 153481124 PCT