Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4101 ATGTTGAACAACATAAATAACAGTAGCCATTCATGGCTGTGGTTTGTGGCGAGGCACTACTCTAGGATTCGTCCTCCAAAGCCTGTCCCTGTTGAATCAGTGATCAGGGTGTCCAACAACGTTGCTCGTTTGGGTTCTCGGAAAGAAGGCCCGAAGCCGAGGCAGCTACTGTCTTTGCCACCTTTTCCTGGTCACCCTTTGCCCGGAAGGAACTCAAATGAAAGTTTTCAAGATGGGCAGCAACATGATGGTTATGTCACTGCTGTTAATTGGATCAAGTATTACTTCAAGGGCATATTGGGTTCTGTCATTGAGTCTCATTTCAGGGAGGGTCTTGTCCAAATGGAGGACCCAATTTCTGACAATAATTTATCTCAGAATGAAGAGCCAAGGAGACCCTTGCGAAAGATTAGACCTAATGAAGTAATGAAGCAAGGGGCAAGAATTCATATCCCTGTGTCAATTGCCGAGGCTAGAATTTCCAAAAGATATGATGCTATACCAAGTGGAACACTATATCCCAATGCTGATGAAATTAAGTATCTGCAAAGGCTTGTCATTTATAAGGACTTGGCTATCATGGTGCTAAATAAACCCCCAAAATTGCCGGTTAAGGGGAATCTGCCAGTTCATAACAGCATGGATGCATTAGCAGCTGCAGCACTATCCTATGATTATGATGAGGGTCCTAAACTGGTCCACCGTCTTGACAGGGAGACCAGTGGCATCATTTTATTTGGCAGAAAAGAAGAAAGTGTGTCTCACCTGCAGTGGCTGTTCAGTAACATAAACAATGCAAAATCTTCTAGTAAGGTTTGGAATGATGCATGTGAATCTACATATCAGAGGTATTGGGCACTAGTCATAGGGACTCCCAAGGAGAAGGAAGGTGTAATTTGTGCTCCCCTTAGAAAGGTGCTCTTGGATGATGGGAAGACAGAGAGGGTCGTATTAGCTCACCATTCAAGTATGGAACCGCGCCAAGAGGCTGTAACTGAATATCGAGTCCTTGGTCCAAAGATAAATGGATGCTCCTGGGTGGAGCTGCGACCACTTACGTACCGGAAGCATCAGTTGCGTGTCCATTGTGCTGAAGCACTTGGCACTCCGATAGTGGGCGACTACAAGTATGGTTGGTTTGTACACAGTCGTTGGAAACAAATGCCCCGAGTTGATGTCGAGCCAACGACTGGAAAACCATACAAGATGAGGAGACCAGAAGGCCTAGATGTTCAGAAGGGAAGTGTATTATCCAAGGTCCCCCTATTGCATCTTCACTGCAGAGAACTTGTACTTCCCAACATAGCTAAGTTTCTTCGTGTTTTCAATAAGAGTTCAGAAGAACTGCCTCGTTCGCTTAGCGCAGAACCTGATGTTCTTCGCTTTGTGGCAACAATGCCATCGCATATGAAAATTAGTTGGAATCTTATGTCATCATATTTAGTCTGA 1449 0.4479 MLNNINNSSHSWLWFVARHYSRIRPPKPVPVESVIRVSNNVARLGSRKEGPKPRQLLSLPPFPGHPLPGRNSNESFQDGQQHDGYVTAVNWIKYYFKGILGSVIESHFREGLVQMEDPISDNNLSQNEEPRRPLRKIRPNEVMKQGARIHIPVSIAEARISKRYDAIPSGTLYPNADEIKYLQRLVIYKDLAIMVLNKPPKLPVKGNLPVHNSMDALAAAALSYDYDEGPKLVHRLDRETSGIILFGRKEESVSHLQWLFSNINNAKSSSKVWNDACESTYQRYWALVIGTPKEKEGVICAPLRKVLLDDGKTERVVLAHHSSMEPRQEAVTEYRVLGPKINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPRVDVEPTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLRVFNKSSEELPRSLSAEPDVLRFVATMPSHMKISWNLMSSYLV* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4101 482 PANTHER RNA PSEUDOURIDINE SYNTHASE 3, MITOCHONDRIAL 11 479 - -
Amo16g4101 482 Pfam RNA pseudouridylate synthase 193 364 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Amo16g4101 482 SUPERFAMILY Pseudouridine synthase 178 435 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Amo16g4101 482 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 11 479 - -
Amo16g4101 482 CDD PseudoU_synth_RluA_like 193 389 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Amo16g4101 482 ProSitePatterns Rlu family of pseudouridine synthase signature. 233 247 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Amo16g4101 482 MobiDBLite consensus disorder prediction 44 80 - -
Amo16g4101 482 Gene3D Pseudouridine synthase 176 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4101 Amo-Chr16 153467170 153473748 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4101 - - pvu:PHAVU_001G032500g 808.135