Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo16g4097 | ATGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCGCGCCTACAACTCCTTCTCCCTCCTTCACCGCTCGCATTCCCCTTCCTCCTTCAGGTGACAGCCCTCCTAATGTTGAATCTAATTCAGCTCTGGTTCCTATCCATATTGTGACAACTGCATCTCAACTCCCAACTGAGTTTCTGGAACCATCGCCGCAGCACCAGTTCATCATTGGTTTTGATTGTGAGGGCGAAGACTTGTGTCGAACTGGAGCTCTATGTCTAATACAGCTTGCATTCCCAGATGCCATTTACTTGGTTGACGCAATAGAAGGTGGGGAAGCGCTGATCAAAGCCTGTAAGCCTGCGCTCGAGTCCAATTTCATCACAAAAGTGATTCATGATTGCAAAAGGGATAGTGAGGCATTGTACTTCCAGTTTGACATCAAGCTGAACAACGTGATGGATACCCAGATTGCATATGCACTGATCGACGAGCAAGAAGGGAAGCGGAAAAGAGATGACAACATTTCTTTTGTTGACCTCCTAGCTGATCCACGTTTTTGTGGCATATCATATGATGAGAAGGAAGAGGTTCGGGTTCTCCTTCGACAGGACCCCAAGTTTTGGAGATATAGACCTTTTTCTGAACGTATGGTCCGCACAGCTACTGATGATGTCCGTTTTCTTCTGTATGTTTATCACCGAATGATGGTGAACTTGAATGAGCGGTCCTTATGGCATCTTGCGGTTCGTGGTGCCCTGTATTGCCGATGTTTTTGTGTGAACAATAATGATTATGCTGATTGGCCATCTCTGCCTCCTATCCCAGATACGCTGAAAGTTGATGGAAATGATCTGGAGGAAGAAATTCTTTCAGTAGTAGACATTCCCCGAGGAATGATGGGACGAGTTATTGGTAGAAGGGGGGCTACAATCTTGACAATTAAGGAGGGATGCAATGCGGAAATTGTCATTGGAGGTTCGAAGGGCCCACCTGACAAGGTCTTCATCATTGGACCAGTGAAGCAGGTGTTGAAAGCTGCGGCATTGATTAGGGGTAGAATCATAGATATATAG | 1056 | 0.4583 | MASSSSSSSSSSAPTTPSPSFTARIPLPPSGDSPPNVESNSALVPIHIVTTASQLPTEFLEPSPQHQFIIGFDCEGEDLCRTGALCLIQLAFPDAIYLVDAIEGGEALIKACKPALESNFITKVIHDCKRDSEALYFQFDIKLNNVMDTQIAYALIDEQEGKRKRDDNISFVDLLADPRFCGISYDEKEEVRVLLRQDPKFWRYRPFSERMVRTATDDVRFLLYVYHRMMVNLNERSLWHLAVRGALYCRCFCVNNNDYADWPSLPPIPDTLKVDGNDLEEEILSVVDIPRGMMGRVIGRRGATILTIKEGCNAEIVIGGSKGPPDKVFIIGPVKQVLKAAALIRGRIIDI* | 352 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo16g4097 | 351 | ProSiteProfiles | Type-1 KH domain profile. | 282 | 344 | - | - | |
| Amo16g4097 | 351 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Amo16g4097 | 351 | Gene3D | K Homology domain, type 1 | 275 | 350 | IPR036612 | GO:0003723 | |
| Amo16g4097 | 351 | PANTHER | - | 23 | 348 | - | - | |
| Amo16g4097 | 351 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
| Amo16g4097 | 351 | Pfam | KH domain | 287 | 345 | IPR004088 | GO:0003723 | |
| Amo16g4097 | 351 | SUPERFAMILY | Ribonuclease H-like | 38 | 256 | IPR012337 | - | |
| Amo16g4097 | 351 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 277 | 348 | IPR036612 | GO:0003723 | |
| Amo16g4097 | 351 | CDD | Egl_like_exo | 59 | 253 | - | - | |
| Amo16g4097 | 351 | SMART | 35exoneu6 | 46 | 234 | IPR002562 | GO:0003676|GO:0006139|GO:0008408 | |
| Amo16g4097 | 351 | Pfam | 3'-5' exonuclease | 48 | 232 | IPR002562 | GO:0003676|GO:0006139|GO:0008408 | |
| Amo16g4097 | 351 | PANTHER | EGALITARIAN, ISOFORM B | 23 | 348 | - | - | |
| Amo16g4097 | 351 | SMART | kh_6 | 281 | 349 | IPR004087 | GO:0003676 | |
| Amo16g4097 | 351 | CDD | KH-I | 287 | 344 | - | - | |
| Amo16g4097 | 351 | Gene3D | - | 3 | 250 | IPR036397 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo16g4097 | Amo-Chr16 | 153438340 | 153443086 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo16g4097 | K18740 | - | gmx:100788577 | 525.783 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Amo16g4097 | 16 | 153438340 | 153443086 | Amo16g4097 | 16 | 153438340 | 153443086 | ECH |