Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4043 ATGGAGAATGATTTCTACAGTTCTTCACTGAACATGGAGCATAATCCTACACCAAAGCCACTTCTTCAGTGCTATTCATTTGATCTTAATAACCAAAACAACATCATAAATGGAATTCCAATGCTTGATTTAGACCAAGGAAGTGTTGATGGTAATAGCTTCATAAATTCTTCAAGTATTCTTAATTCTAATTCATTCGTTACTTCATCACAAGGAAAGACTACAGTAGGAGATACCTCAAATGCGACCGGAAATGGCGAGTTTCATGAGAATTTAGCCGGAGGAACGCAGCCGAACGGCGCGCTGGCTTCTCCGCTCACAACCATTCTTGCTGCTAGAATTGGCCTTCAAGAAAATCTAGAGAATTCAGCAACTTTGTTGCCTTCATTTGAGGCACTAGGACAATATGTCTTCAATAATTGGCATGATACTACTTCAAATTCAAGCCCTTTTCCGGCGACTTTCTATGGCGATCGTGGCTACGATGAAGTCCCTAGTAATGGTAAGTGGAGCTTTAACAAGTTTCCAAAAGCACCAGAGGTTGAAGGAAGTGGATTGGTACCATATGCATCCATAGGGAATCTTGATCCTAATGGATGGACATCATTGAATGCTGCAAATTTGGCTAATCATGCTTACAATTCTTCGAGTTATAGCAACGAGCTATCGTTAAGTCTTGCTACTTCGCCGGCTGCAGCTCAGTGCTCGGAGATTAGCTGCTCCGATGTGAGCTGTGGCATGAATGAAACAAGGACAGGATTGGAGAAAGGTTCTTGCAGCAGTAGGGAACTGTCTATGAGTTTAGGTTCTGAAAAACATGTCCGGTTTTCGCCGGTGATACTTGGATCAAAGTACCTTGTAGGAATTCAAGAGGTACTGGCTCAAATTGCAGCATATTCAATTGAGAATGTAGAAGAGGTGAATTATTTAGGTGCTGGTGATAGAGCTGGAGGAAATAAATCAACATCAGGTTTTGCACAAAAGACTACACCAGCAACAAATTCAAATGCAAATTCTTCTATGTTTGAAGCTCATGCAGAGTCTCCATTGCAAAGACATGCAGCTGAATCAAACAAATCCCAGTTGCTGACACTTTTACAGCTGGTGGACAGCCGATACAGTCAGTGTTTGGATGAGATACACACTGTTGTATCGGCATTCCACGCAGCAACAGAGCTCGATCCGGAGAGGATCAGCAATCATATTCTTGCAACAGGGACCAATTTCGGCGAGTCGTGCTCGGAAGATAAGGAATGGTCTGTTGATACTTCATTCATTCAAAAGCAATGGGCTATCCAGCAGTTGAAAAGAAAAGATCAGCTCTGGAGGCCTCAAAGGGGCTTGCCTGAAAAATCTGTCTCAGTTCTTCGTGCTTGGATGTTCCAGAACTTCCTCCATCCGTATCCTAGAGATGCAGAAAAGCATTTACTTGCTGTAAAAAGTGGGTTAACTAGAAGTCAGGTATCTAACTGGTTCATAAATGCTCGTGTCCGGTTATGGAAACCTATGATTGAGGAAATGTATGCTGAAATGAATAGAAGAAAAGCTTGTCGAATCGAAGAAGGGATGGAAGATGGCCATAGAAGCAGGCTAAGCATGAACAATCATTACTTTAATATGAATTGA 1626 0.4207 MENDFYSSSLNMEHNPTPKPLLQCYSFDLNNQNNIINGIPMLDLDQGSVDGNSFINSSSILNSNSFVTSSQGKTTVGDTSNATGNGEFHENLAGGTQPNGALASPLTTILAARIGLQENLENSATLLPSFEALGQYVFNNWHDTTSNSSPFPATFYGDRGYDEVPSNGKWSFNKFPKAPEVEGSGLVPYASIGNLDPNGWTSLNAANLANHAYNSSSYSNELSLSLATSPAAAQCSEISCSDVSCGMNETRTGLEKGSCSSRELSMSLGSEKHVRFSPVILGSKYLVGIQEVLAQIAAYSIENVEEVNYLGAGDRAGGNKSTSGFAQKTTPATNSNANSSMFEAHAESPLQRHAAESNKSQLLTLLQLVDSRYSQCLDEIHTVVSAFHAATELDPERISNHILATGTNFGESCSEDKEWSVDTSFIQKQWAIQQLKRKDQLWRPQRGLPEKSVSVLRAWMFQNFLHPYPRDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNRRKACRIEEGMEDGHRSRLSMNNHYFNMN* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4043 541 PANTHER HOMEOBOX PROTEIN ATH1 17 537 - -
Amo16g4043 541 CDD homeodomain 442 503 IPR001356 GO:0003677
Amo16g4043 541 Pfam Associated with HOX 279 394 IPR006563 -
Amo16g4043 541 Pfam Homeobox KN domain 459 498 IPR008422 GO:0003677|GO:0006355
Amo16g4043 541 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 17 537 - -
Amo16g4043 541 ProSiteProfiles 'Homeobox' domain profile. 439 502 IPR001356 GO:0003677
Amo16g4043 541 SMART prehox3 274 415 IPR006563 -
Amo16g4043 541 SMART HOX_1 442 506 IPR001356 GO:0003677
Amo16g4043 541 MobiDBLite consensus disorder prediction 320 337 - -
Amo16g4043 541 Gene3D - 445 523 - -
Amo16g4043 541 SUPERFAMILY Homeodomain-like 443 511 IPR009057 -
Amo16g4043 541 MobiDBLite consensus disorder prediction 316 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4043 Amo-Chr16 152689631 152691951 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g4043 215 515 Homeobox Transcription Factor Family AT4G32980 52.012 7.36e-94 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Amo16g4043 POX 1.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4043 - - aip:107605517 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4043 16 152689631 152691951 Amo16g4043 16 152689631 152691951 ECH