Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0880 GGGACCATTGCAGCAATTAAGAATTTAAGATGGCAGTATATGATCATGGAGGGAAAACACTCTGTTCCAAGTATGACCAAGCCTACTAATATCATACAAAATCATGACTTCTCTGAAGGGCTAAGCTTTTGGCATCCGAATGGCTGYGACGGCTATGTTGCTTCAACTGAACCAGGTCCTCAAGGAGGAGTGACAATGACATTAGGTGCTAAATATGCTGTTATCACAAACAGAAAGGAATGGTGGCAAGGTCTTGAGCAAGATATCACYGGAAAARTCTCTGTCGCTTCCACTTATGCTGTTTCGGCCAATGTTGGAGTAGCTGCACTTTCTGAGGGATCTGCTGATGTTCTAGCTACCCTGAAACTAGAGTATCATGGTTCTGATGCAAGCTACCTGTTCCTTGGGAGAACTTCTTGTACAAATGGTAGCTGGGAAAATCTGAAAGGGACATTTTCATTGTCAACTATGCCTGATCGAGTTACATTTTATTTGGAAGGACCTGCTCCTGGAGTTGACCTTCTTATACAATCAGTAGAGATTACCTGCTCTAGTTCAAGTGATATTGAGGATCATGCAAAAACAACAGGAACTTTGTCAACTGAAGATGATAACATCATAATAAACCCACAATTTGATGATGGCCAGAATAACTGGTCTGGAAGAGGCTGCAAGATCGCAATACACGACTCACTGGGAAATGGAAAAGTCCTTCCCAAGGTTGGAAAATTCTTTGCAGCTGCAACAGAACGCACCCAAAGCTGGAATGGAATTCAGCAGGACATTACCGGACGGGTGCAGCGCAAGCTCGCCTATGAACTCTCTGCTTTGGTTCGGATATTTGGAGGCAATGTGACTTCTTCTGATGTCCGCGCAACTTTATGGGTTCAGAATCCGGATTCTCGAGAGCAGTATATAGGAATTGCCAATGTGCAGGCAACAAATCAAGATTGGGTTCAATTGCAGGGAAAGTTCCTCATAAATAATTCCCCATCAAAAGTGGTTGTTTATTTAGAAGGTCCCCCAGCAGGCATTGACATTCTTGTCAATACTATTGTTATAAAACATGCTCCCAAGACAWCTCCATCAACGCCACCAGATTTTGAGGATGCTCCTTTTGGGATTAATATAATTGAGAATAGTAATCTGGCTAATGGCACCAATGGATGGTTTCCCCTTGGTAATTGTACTCTGAGTGTTGGAACCGGTTCGCCACGTGTGCTTCCACCAATGGCAAGAGACTCTCTTGGACCTCACGAATCATTGAGCGGCCGCTATGTCCTTGTAACGAACCGCACCCAAACATGGATGGGGCCTGCKCAGATGATCACTGAGAAATTGAAGCTGTTCTTAACATACCAAGTGTCTGCTTGGGTGAGGATTGGTTCAACAGGATCAGTTGGTCCTCAGAATGTGAATGTTGCCCTTAGTGTTGACGATCAGTGGGTGAATGGMGGACARGTTGAGGTTGCTGATGACAGATGGCATGAAATTGGTGGATCATTTAGAATTGAGAAGCAACCATCAAAGGTTATGGTTTATATTCAAGGTCCTGCTTCTGGTGTTGATTTGATGATTKCTGGACTTCAAATCTTCCCTGTTGATAGACAAGCAAGGTTTAGATATTTAAGGAGGCAGACAGACAAGGTTCGAAAGCGCGATGTAATCTTGAAATTCTCTGGGCTGGAGGACATAAGTGGTCTAGGAACTTTGGTTAAAGTGAGGCAAATACAGAACGATTTTCCAATTGGAACATGCATCAACAGAACAAACATTGACAATGAAGACTTTGTTGACTTCTTTGTGAAGCATTTTAACTGGGCTGTGTTTGGGAATGAGTTGAAGTGGTATTGGACAGAACCACAACAGGGGAATATCAACTACAAAGATGCTGATGAAATGTTAGACTTATGCCTCAAGAACAAGATAGAAACCCGCAGCCACTGCATCTTCTGGGAAGTAGAAGGCACAGTTCAGCAGTGGATCAAATCACTGAACAAAGACGATTTGATGAAAGCGGTCCAAAATCGGTTAAGCAGCCTCTTGAATCGGTACAAGGGGAAGTTCAGGCACTATGATGTTAACAATGAAATGCTGCATGGTTCATTTTATCAAGACAGGCTTGGTAGAGACATAAGAGCAAACATGTTCAAGACAGCACACCAATTAGACCCATCTGCTACTCTCTTTGTGAATGATTATCACATTGAAGATGGAAACGACACAAGATCAACACCAGAGAAATACATTCAACAGATTCTTGATTTGCAACATCAAGGTGCACCAGTTGGTGGAATTGGAATTCAAGGACACATAGATAGTCCTGTGGGGCCTATTGTTTGTTCTGCACTTGATAAATTAGGGACTCTTGGTTTACCAATATGGTTCACTGAGCTTGATGTTTCTTCAAGAAATGAGTATGTTAGAGCTGATGATTTGGAAGTTATGATGAGGGAAGCCATGGCACACCCTTCAGTAGATGGCATAATGCTGTGGGGATTCTGGGAATTGTTTATGAGCAGRGAGAATTCACACTTGGTGAATGCAGAAGGTGATGTTAATGAAGCTGGAAAAAGGTTACTTTGTCTTAAACAAGAGTGGTTGTCTCATAGCCATGGCTGTGTTGATGATCAAGGACTATTCAGCTTCAGAGGCTTCAGTGGAACATACAATGTTGAAGTTGTAACCTTATCTAAGATTGTTTCAAAGACATTTGTTGTTGGTAAAGGTGACTCTCCTTTGGAGGTAGAGGTATCCTTTGACTAG 2766 0.4244 GTIAAIKNLRWQYMIMEGKHSVPSMTKPTNIIQNHDFSEGLSFWHPNGCDGYVASTEPGPQGGVTMTLGAKYAVITNRKEWWQGLEQDITGKXSVASTYAVSANVGVAALSEGSADVLATLKLEYHGSDASYLFLGRTSCTNGSWENLKGTFSLSTMPDRVTFYLEGPAPGVDLLIQSVEITCSSSSDIEDHAKTTGTLSTEDDNIIINPQFDDGQNNWSGRGCKIAIHDSLGNGKVLPKVGKFFAAATERTQSWNGIQQDITGRVQRKLAYELSALVRIFGGNVTSSDVRATLWVQNPDSREQYIGIANVQATNQDWVQLQGKFLINNSPSKVVVYLEGPPAGIDILVNTIVIKHAPKTXPSTPPDFEDAPFGINIIENSNLANGTNGWFPLGNCTLSVGTGSPRVLPPMARDSLGPHESLSGRYVLVTNRTQTWMGPAQMITEKLKLFLTYQVSAWVRIGSTGSVGPQNVNVALSVDDQWVNGGQVEVADDRWHEIGGSFRIEKQPSKVMVYIQGPASGVDLMIXGLQIFPVDRQARFRYLRRQTDKVRKRDVILKFSGLEDISGLGTLVKVRQIQNDFPIGTCINRTNIDNEDFVDFFVKHFNWAVFGNELKWYWTEPQQGNINYKDADEMLDLCLKNKIETRSHCIFWEVEGTVQQWIKSLNKDDLMKAVQNRLSSLLNRYKGKFRHYDVNNEMLHGSFYQDRLGRDIRANMFKTAHQLDPSATLFVNDYHIEDGNDTRSTPEKYIQQILDLQHQGAPVGGIGIQGHIDSPVGPIVCSALDKLGTLGLPIWFTELDVSSRNEYVRADDLEVMMREAMAHPSVDGIMLWGFWELFMSRENSHLVNAEGDVNEAGKRLLCLKQEWLSHSHGCVDDQGLFSFRGFSGTYNVEVVTLSKIVSKTFVVGKGDSPLEVEVSFD* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0880 921 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 25 182 - -
Amo08g0880 921 Pfam Carbohydrate binding domain 204 341 IPR003305 GO:0016798
Amo08g0880 921 Pfam Carbohydrate binding domain 30 170 IPR003305 GO:0016798
Amo08g0880 921 Pfam Carbohydrate binding domain 376 520 IPR003305 GO:0016798
Amo08g0880 921 Pfam Glycosyl hydrolase family 10 577 834 IPR001000 GO:0004553|GO:0005975
Amo08g0880 921 ProSitePatterns Glycosyl hydrolases family 10 (GH10) active site. 791 801 IPR031158 -
Amo08g0880 921 Coils Coil 846 866 - -
Amo08g0880 921 Gene3D - 24 183 - -
Amo08g0880 921 Gene3D - 373 532 - -
Amo08g0880 921 Gene3D - 199 356 - -
Amo08g0880 921 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 193 918 - -
Amo08g0880 921 SUPERFAMILY (Trans)glycosidases 572 871 IPR017853 -
Amo08g0880 921 SUPERFAMILY Galactose-binding domain-like 28 184 IPR008979 -
Amo08g0880 921 SUPERFAMILY Galactose-binding domain-like 374 535 IPR008979 -
Amo08g0880 921 PANTHER GLYCOSYL HYDROLASE 25 182 IPR044846 GO:0004553|GO:0005975
Amo08g0880 921 PANTHER GLYCOSYL HYDROLASE 193 918 IPR044846 GO:0004553|GO:0005975
Amo08g0880 921 SMART glyco_10 614 864 IPR001000 GO:0004553|GO:0005975
Amo08g0880 921 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 568 863 IPR001000 GO:0004553|GO:0005975
Amo08g0880 921 SUPERFAMILY Galactose-binding domain-like 203 359 IPR008979 -
Amo08g0880 921 Gene3D Glycosidases 568 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0880 Amo-Chr8 15140813 15144547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0880 29 920 Glycoside Hydrolase AT1G58370 66.480 0.0 1263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0880 - - lja:Lj0g3v0316669.1 1449.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4104 16 153475716 153481124 Amo08g0880 08 15140813 15144547 PCT
Amo08g0880 08 15140813 15144547 Amo16g4104 16 153475716 153481124 PCT