Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0875 ATGGGTAGGGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGGCCATGGTCCCCAGAAGAAGATTCCAAACTCAAATCCTACATCGAACAACACGGCACTGGTGGCAACTGGATTGCTTTGCCCCAAAAGATCGGGCTTAAGCGATGTGGCAAGAGTTGCCGTCTGCGGTGGCTCAACTACCTTCGCCCTAATCTCAAGCACGGTGGTTTCTCCGAAGAAGAAGACAACATCATTTGCAGCCTCTATGTTACTATTGGAAGCAGGTGGTCGGTGATTGCAGCGCAGTTGCCTGGAAGAACAGACAACGACATAAAGAACTATTGGAATACCAAGCTGAAGAAGAAGCTTCTGGGAAAACACCGCACTAATAACAAAGAGCACCACCAACAACCACGTTCTAGAAAGCAAGCATCAACAACCAATAATACTAGTGTTACCGGGGATTTTTCATCATCATCATCATCATCTGCTACTGCTACTTATTGGTCACACATGCATATGCCTATGCTGCCACTACCACCACCACCACCACCATTACCACCGTTGCCATACGCAGAAGATAATAATAATAGCAACAATGAAGAGCCCAGTTTCAACGACCAAGACTCTCTCAGGAAACTTCTTATCAAGCTCGGAGGAAGATTCTCCAACAACAATTTTAATGAGGATTATCAGCGGCCACCACTTGATGATGGGGTCATCATGAATTTTCATCAATTCCCTTCTTATGAAAATCATCATCATAATATTGGATCATCATCTAGTTGCATGGTATCTGCTAATAATTATCCACAAAGGTTAGATGGATTGGAGTTCTTTTACGGAGAGGAAATGGCTGTAACTAATGATGAGAAGATAATAGAAACTGGTGGTGCTTCTAATAATAATAATGAGTGGTGTGAGAGCAGCAACACCACACTGATTTATCCTCCTCTTCATGAAGATTTCAGCTACCGAACCCCGCAATAG 972 0.4372 MGRAPCCDKANVKKGPWSPEEDSKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYVTIGSRWSVIAAQLPGRTDNDIKNYWNTKLKKKLLGKHRTNNKEHHQQPRSRKQASTTNNTSVTGDFSSSSSSSATATYWSHMHMPMLPLPPPPPPLPPLPYAEDNNNSNNEEPSFNDQDSLRKLLIKLGGRFSNNNFNEDYQRPPLDDGVIMNFHQFPSYENHHHNIGSSSSCMVSANNYPQRLDGLEFFYGEEMAVTNDEKIIETGGASNNNNEWCESSNTTLIYPPLHEDFSYRTPQ* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0875 323 MobiDBLite consensus disorder prediction 135 155 - -
Amo08g0875 323 MobiDBLite consensus disorder prediction 173 202 - -
Amo08g0875 323 PANTHER MYB DNA-BINDING DOMAIN SUPERFAMILY PROTEIN-RELATED 1 169 - -
Amo08g0875 323 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Amo08g0875 323 CDD SANT 71 111 IPR001005 -
Amo08g0875 323 CDD SANT 16 62 IPR001005 -
Amo08g0875 323 MobiDBLite consensus disorder prediction 116 155 - -
Amo08g0875 323 SMART sant 13 64 IPR001005 -
Amo08g0875 323 SMART sant 67 115 IPR001005 -
Amo08g0875 323 PANTHER OS09G0431300 PROTEIN 1 169 - -
Amo08g0875 323 Gene3D - 7 68 - -
Amo08g0875 323 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Amo08g0875 323 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Amo08g0875 323 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Amo08g0875 323 Gene3D - 70 146 - -
Amo08g0875 323 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Amo08g0875 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Amo08g0875 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0875 Amo-Chr8 15012018 15013764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0875 1 127 MYB Transcription Factor Family AT3G49690 88.189 5.74e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo08g0875 Myb_DNA-binding 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0875 K09422 - gmx:100790407 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4109 16 153599485 153601387 Amo08g0875 08 15012018 15013764 PCT
Amo08g0875 08 15012018 15013764 Amo16g4109 16 153599485 153601387 PCT