LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip07g03478	ATGAAGTGGATCAACAGTGATGGTAACAATCATAACGCCTGGTTGGGCTTCTCTCTCTCACCCCATCACATGAAATTCGACCTTCCTAATTCTTCTTCTTCTTCTTCTTCTACTTCGTCCTCCTCCTGCGGTGGGGATCACAGTGCTGCCTTTCATTCTCAGTTGAGCGTGATGCCTCTCAAGTCAGACGGTTCACTTTGCATCATGGAAGCTCTCACTAGATCACATCAAACACAACAAGTGATGGTTGGTAGTTCGTCTCCGAAGCTGGAAGACTTTCTGGGTGGTGCAAGCATGGGAACACACGAAAGAGAGGCCATTGACACCATCTACTACCCTCCTCATAGAGGCTTTCTCTCAGAGCCTTTGAGGCATCCACCATATTACTCCCTTGGCTGCCATGGCATGTACCAAGCACCACCCCCAACAATGCCCCACATAGCAGAAGCAGCAGCAGAAGAAGAAGAAGAAGAAGAAGAAGGCATTGATGGATTCAAGAAGTGGGTGGAGCAGCAGCAGCAGCAGCAGCAGCAGTCGCTGAGTCTGTCAATGAGTCCAGGGTCGGAGTCAAGTTGTGTAACAGCTGCGAGGCATGAGAATGGGAAGAGTGAGTCGTCGGTGGTGGCAGTAACAGTAATGGACAATAGCAACAAGAAGAGAGGGCTAGCTAACAAGCAACCAGTTCACAGAAAATCCATTGACACTTTTGGTCAGAGAACTTCTCAGTATCGAGGCGTCACCAGGCATAGATGGACTGGTAGATACGAAGCACATTTATGGGATAACACTTGCAAGAAGGAAGGCCAAACTAGGAAAGGAAGACAGGTGTATTTGGGGGGTTATGATATGGAACAAAAAGCTGCAAGAGCCTATGATCTTGCTGCCCTTAAGTACTGGGGACCTTCAACCCACATCAATTTTCCGTTGGAAAATTACCAAGCGGAACTTGAGGAGATGAAGAACATGACCAGGCAGGAATATGTCGCTCACTTGAGAAGAAAAAGCAGTGGATTTTCTAGGGGTGCTTCAATATACAGAGGGGTGACAAGACATCATCAACATGGAAGATGGCAAGCAAGGATTGGCAGAGTTGCTGGGAACAAGGACCTTTACCTTGGGACATTCAGCACTCAAGAGGAGGCAGCAGAAGCATATGATGTAGCAGCAATCAAGTTCCGTGGTTCCAATGCAGTTACAAACTTTGACATATCAAGATACGACGTGGAAAGAATCATGGGGAGTAACACTTTGCTTGCAGGGGAGCTAGCTAGGCGAAACAACAAAGATACTGCTATTGAACCACCAAGATGGGAGGCCATTGAATACAACACGAATGTGGAAGCAGTTCAAGCTAGAAACAACAACAATGACAATAATAATAATAATAATAACAATGATGTTGATTCCAACTGGAAGATGGTTTCTGGTGGTGCTTTCTCTGTGGGGATACATGATCTGATTGGGATTGAAGGGCAGCATCAGCATCAGCATCAGCATCATCAGCAGCAGCCATTGATGGAGGCTTCTTCGCTTGTGACCAGCCTAAGCAGCTCAAGAGAGGCTAGCCCTGATAAAATAATGGGTCCCTCGTCAATGATCTTTCCAAAACCTCTTCAACTTGAACCCAAGATGGTTCTTAACAACCCCTTAACTAGTACTGGTGTTGTTGGATCTTGGTTCCCTTCTCAAATGAGGCCAGCTTCTGCTGCCATCTCTTTGTCTCACTTGCCTGTTTTTGCTGCTTGGAACGATACCTAG	1758	0.4659	MKWINSDGNNHNAWLGFSLSPHHMKFDLPNSSSSSSSTSSSSCGGDHSAAFHSQLSVMPLKSDGSLCIMEALTRSHQTQQVMVGSSSPKLEDFLGGASMGTHEREAIDTIYYPPHRGFLSEPLRHPPYYSLGCHGMYQAPPPTMPHIAEAAAEEEEEEEEGIDGFKKWVEQQQQQQQQSLSLSMSPGSESSCVTAARHENGKSESSVVAVTVMDNSNKKRGLANKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNTCKKEGQTRKGRQVYLGGYDMEQKAARAYDLAALKYWGPSTHINFPLENYQAELEEMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGSNAVTNFDISRYDVERIMGSNTLLAGELARRNNKDTAIEPPRWEAIEYNTNVEAVQARNNNNDNNNNNNNNDVDSNWKMVSGGAFSVGIHDLIGIEGQHQHQHQHHQQQPLMEASSLVTSLSSSREASPDKIMGPSSMIFPKPLQLEPKMVLNNPLTSTGVVGSWFPSQMRPASAAISLSHLPVFAAWNDT	585

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip07g03478	585	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT	176	583	-	-
	Aip07g03478	585	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT	34	105	-	-
	Aip07g03478	585	ProSiteProfiles	AP2/ERF domain profile.	344	402	IPR001471	GO:0003700\|GO:0006355
	Aip07g03478	585	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	176	583	-	-
	Aip07g03478	585	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	34	105	-	-
	Aip07g03478	585	ProSiteProfiles	AP2/ERF domain profile.	242	308	IPR001471	GO:0003700\|GO:0006355
	Aip07g03478	585	SUPERFAMILY	DNA-binding domain	241	310	IPR016177	GO:0003677
	Aip07g03478	585	SUPERFAMILY	DNA-binding domain	343	404	IPR016177	GO:0003677
	Aip07g03478	585	Pfam	AP2 domain	242	300	IPR001471	GO:0003700\|GO:0006355
	Aip07g03478	585	Pfam	AP2 domain	344	394	IPR001471	GO:0003700\|GO:0006355
	Aip07g03478	585	Gene3D	AP2/ERF domain	241	310	IPR036955	GO:0003700\|GO:0006355
	Aip07g03478	585	Gene3D	AP2/ERF domain	344	404	IPR036955	GO:0003700\|GO:0006355
	Aip07g03478	585	MobiDBLite	consensus disorder prediction	169	192	-	-
	Aip07g03478	585	CDD	AP2	343	404	IPR001471	GO:0003700\|GO:0006355
	Aip07g03478	585	PRINTS	Ethylene responsive element binding protein signature	243	254	IPR001471	GO:0003700\|GO:0006355
	Aip07g03478	585	PRINTS	Ethylene responsive element binding protein signature	384	404	IPR001471	GO:0003700\|GO:0006355
	Aip07g03478	585	SMART	rav1_2	242	314	IPR001471	GO:0003700\|GO:0006355
	Aip07g03478	585	SMART	rav1_2	344	408	IPR001471	GO:0003700\|GO:0006355
	Aip07g03478	585	CDD	AP2	241	308	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip07g03478	Aip-Chr7	124685592	124689237	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip07g03478	3	432	AP2-EREBP Transcription Factor Family	AT4G37750	54.268	2.03e-160	468

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Aip07g03478		AP2	3.7e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip07g03478	K09285		-	gmx:100787223	608.986

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip07g03478	07	124685592	124689237	Aip07g03478	07	124685592	124689237	ECH
	Aip06g03662	06	134089362	134092978	Aip07g03478	07	124685592	124689237	PCT