Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03662 ATGAAGTCTTTCTTGAATGATGGAAACAATACTACTACTGCTACTACTACTAATCATGATGATGATAGTAACAATCATAACTGGTTGATGGGTTTCTCTCTCTCACCCCACCACCACCACAACATGAAAATGGAGGTTCCCAATGATCATAATCATAATCATCATCATCATCATCATCACCATCAGTATTATCATCATCTTCATCATCCTTCAAGCACTGCCTCAACAACAAGTAGCTTATTCTACTTGTCACCTTCACAGTTGAATAATCCTTCTTCAACAATGTGTTATGCTGAAAACCCTTCTCCCTTTCATTCTTCTCCTTCTCTGGCTATGATGCCACTCAAATCTGATGGCTCACTCTGCATAATGGAAGCTCTCACTACATCACAAACCCAAGTGATGGTGCCAAGTTCTTCATGTTCATCTCCAAAGCTTGAGGACTTTCTAGGTGGTGCAACAATGGGAGCTCATGAATATGGTGAACATGAAAGAGAAGCAATGGCTCTAAGCTTAGACAGCATTTACTATAACAATAGCCATCATCATCATCATCAAAATTCTGAGGCTGAAAACAACAACAGACAACAACATTGTTCTTCTAATTCTTCTTTGGACCTTATTCTCTCAGACCCTTTTAAGCAACAAGGGCATAATAGTAATAATCATCATCATGAACATGATCATGATGTGAATCAATACTATTCAGCACTTGGCTGCAGCAATGATGGTTCTACTAACATTCTACCATTTGTTGAAGAAGAAGAAGAAGAAACAACAAAGGAACCTCATCATCAAATGCATCAAGAACAAGAGAATAATAATTGCTTCATCAGAAACTGGGTTAATGGAAATAATAATAATAATAATAATAATAATGGAATGGTGGAAAGTGTTAATGTGAATGTTAATGGTGGAGGTGGGAATTTGAAGACTTTAAGTCTTTCAATGAGTCCTGGTTGTTCATCTACTTCTCAATCATCATCAAGCCATCTAGAAAACTACCAAAATGAACTTGAAGAAATGAAGAACATGAACAGGCAGGAATATGTTGCACATTTGAGAAGAAAAAGTAGTGGATTTTCAAGGGGAGCTTCAATGTATAGAGGGGTGACAAGGCACCACCAACATGGGAGATGGCAAGCAAGGATAGGCAGAGTAGCGGGAAATAAGGACCTTTATCTTGGGACATTCAGTACTCAAGAAGAAGCAGCAGAAGCATATGATGTGGCTGCAATCAAATTCCGTGGGGTGAATGCAGTCACAAACTTTGACATTTCAAGATATGATGTTGAAAGGATCATGGCTAGTAACACCCTACTTGCCGGAGAATTGGCCAGAAAGAACAACAACGAGCAGCCGAAGGCGATCGAGGCGGCGCCGGCACCGGCACCGGCAACAACCCTAGAGTACAATGTTGTAACAAGCCACATCAACAAGAAGGAGTTGGTAGAAGTTGAAGGTTGTAACAACAACAACATTGAAAATGGTTCAGATGAATGGAAGAAGATTGGATTTAATGATGATTATAGAAATTGTCAAACTTTCTGTGGTGGTGGGGCCCTACAAGATCTAATTGGCATTCAAAACCCTAATATGGGAGGAGGGACTCATTTTTCAAACCCATCTTCACTAGTGACAAGTTTGAGCAACTCATCAAGAGAAGGTAGCCCTGTTCACAACATGAACAAGAACAACAATAGTAGTCATCATCAAAATGTGTTTCATCAAAAGGTTAATAATAATAATAATGTTGTTAGCCCTATTATTGTTGCCAATAATACTAGTACTACTAGTGTTGTTAGTTCTTGGTTCCCTTCACCACCTCCTCAAATTAGGTCTACTATGTCTCCCATGCCCATTTTTGCGGCTTGGACTGAACCCTAG 1887 0.3932 MKSFLNDGNNTTTATTTNHDDDSNNHNWLMGFSLSPHHHHNMKMEVPNDHNHNHHHHHHHHQYYHHLHHPSSTASTTSSLFYLSPSQLNNPSSTMCYAENPSPFHSSPSLAMMPLKSDGSLCIMEALTTSQTQVMVPSSSCSSPKLEDFLGGATMGAHEYGEHEREAMALSLDSIYYNNSHHHHHQNSEAENNNRQQHCSSNSSLDLILSDPFKQQGHNSNNHHHEHDHDVNQYYSALGCSNDGSTNILPFVEEEEEETTKEPHHQMHQEQENNNCFIRNWVNGNNNNNNNNNGMVESVNVNVNGGGGNLKTLSLSMSPGCSSTSQSSSSHLENYQNELEEMKNMNRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARKNNNEQPKAIEAAPAPAPATTLEYNVVTSHINKKELVEVEGCNNNNIENGSDEWKKIGFNDDYRNCQTFCGGGALQDLIGIQNPNMGGGTHFSNPSSLVTSLSNSSREGSPVHNMNKNNNSSHHQNVFHQKVNNNNNVVSPIIVANNTSTTSVVSSWFPSPPPQIRSTMSPMPIFAAWTEP 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03662 628 Gene3D AP2/ERF domain 367 427 IPR036955 GO:0003700|GO:0006355
Aip06g03662 628 Pfam AP2 domain 368 417 IPR001471 GO:0003700|GO:0006355
Aip06g03662 628 ProSiteProfiles AP2/ERF domain profile. 367 425 IPR001471 GO:0003700|GO:0006355
Aip06g03662 628 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 25 324 - -
Aip06g03662 628 Coils Coil 325 352 - -
Aip06g03662 628 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 25 324 - -
Aip06g03662 628 MobiDBLite consensus disorder prediction 181 201 - -
Aip06g03662 628 MobiDBLite consensus disorder prediction 1 24 - -
Aip06g03662 628 MobiDBLite consensus disorder prediction 52 67 - -
Aip06g03662 628 CDD AP2 366 427 IPR001471 GO:0003700|GO:0006355
Aip06g03662 628 SUPERFAMILY DNA-binding domain 366 427 IPR016177 GO:0003677
Aip06g03662 628 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 332 595 - -
Aip06g03662 628 SMART rav1_2 367 431 IPR001471 GO:0003700|GO:0006355
Aip06g03662 628 MobiDBLite consensus disorder prediction 48 71 - -
Aip06g03662 628 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 332 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03662 Aip-Chr6 134089362 134092978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03662 333 451 AP2-EREBP Transcription Factor Family AT4G37750 89.916 5.76e-70 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip06g03662 AP2 4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03662 K09285 - gmx:100798179 295.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03662 06 134089362 134092978 Aip06g03662 06 134089362 134092978 ECH
Aip06g03662 06 134089362 134092978 Aip07g03478 07 124685592 124689237 PCT