Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03659 ATGGGGGGTCATGAGAATGCAATGGGGTTTCATCATGGAAATGAGAGCATTCTGACAAATAATGTTAATGTCTCAGAAATGGATATGAGTTCTTCTATGTCATTGGCTAAGTCTTCTTCTTCAGATGTTGTTGTACCTAATAGTAACCCTTTTCTTGCTTCTTCTTCTTCTTGGGATCCAATTGTTTCCTTAAGCCAATCTCAAACTTTTGGAGGGTCATCAATGGTTACTACTCACAATAGTGATTTTGGAAATTCTTCATCTTACCCTTTTGTTCAATATATGTCTGACTCAACCAATCTTGAGGGCATTATGGTCCACAAAATTCCATCTTTTGGTAGTGGAAACTTCTCAGAAATTGTTGGATCCTTTTGTCAAGAAGGGTCTTCTGATATACCTAACATGGGGTTTAGACCAAGTTATAATCATGGCAATGATGCTGGAACCGAAAGAGCTCCAATGAATGAACAATCTCAGGTTGAGGACTCAATTACTGAAGATGGTGCACCAGGAACTGCACCTAGTGGAAATCGAAGAAAGCGCATGCTTGATCATGATTCTTCTTTCAGTCCAAACAAGAATGCTGGTGGCGATGAACTGAAAGACTCTCCAAGGACGATATCTGATGGTGCTAAAGAACACGAAAAGAAGGCGAAAGTCGAGCAGAATGTGAGTGCTGATTTGCGAGGCAAGCAACCGGCAAAGCAATCAAAAGAAAATTCTCCAAGTGGAGAAGCTCCTAAAGAAAATTTCATCCATGTGAGAGCAAGAAGGGGTCAAGCTACAAACAGTCACAGCCTTGCAGAAAGGGTGAGAAGAGAAAAGATTAGTGAGAGAATGAGATTGCTCCAAGAACTTGTTCCAGGGTGCAACAAGATAACTGGCAAAGCAGTAATGCTGGATGAGATTATAAACTATGTGCAGTCTCTGCAGCAACAAGTTGAGTTTTTGTCCATGAAACTTGCCACAGTGAACCCGGAACTGAATTTTGACGTAGAACGGATCCTGTCGAAGGAAATTCTTCAATCGCGCTTAGGACATGGAATTGTTGGATATGGTGTTGGTATGAGCTCCCCTCACCCATTCTCCAATGGAAGTTTTCAAGGAAACATGGCTGGCATGCCTAGTACATCAACACAATTCCCTCCTTTGCCTCAGGGTGTTTTGGACCATGAGTTCCAAAGTCTTTATGGAATGGGGTATGATCCTAATACAGCACTTGACAATTTGGGACCAAATGTGTCATGCTTATCAGGAAGATTGAAGACAGAATTATAG 1278 0.4155 MGGHENAMGFHHGNESILTNNVNVSEMDMSSSMSLAKSSSSDVVVPNSNPFLASSSSWDPIVSLSQSQTFGGSSMVTTHNSDFGNSSSYPFVQYMSDSTNLEGIMVHKIPSFGSGNFSEIVGSFCQEGSSDIPNMGFRPSYNHGNDAGTERAPMNEQSQVEDSITEDGAPGTAPSGNRRKRMLDHDSSFSPNKNAGGDELKDSPRTISDGAKEHEKKAKVEQNVSADLRGKQPAKQSKENSPSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERILSKEILQSRLGHGIVGYGVGMSSPHPFSNGSFQGNMAGMPSTSTQFPPLPQGVLDHEFQSLYGMGYDPNTALDNLGPNVSCLSGRLKTEL 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03659 425 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 258 328 IPR036638 GO:0046983
Aip06g03659 425 SMART finulus 266 316 IPR011598 GO:0046983
Aip06g03659 425 Gene3D - 257 331 IPR036638 GO:0046983
Aip06g03659 425 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 424 IPR024097 GO:0006355
Aip06g03659 425 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 16 424 - -
Aip06g03659 425 MobiDBLite consensus disorder prediction 151 165 - -
Aip06g03659 425 MobiDBLite consensus disorder prediction 135 248 - -
Aip06g03659 425 Pfam Helix-loop-helix DNA-binding domain 263 311 IPR011598 GO:0046983
Aip06g03659 425 MobiDBLite consensus disorder prediction 198 224 - -
Aip06g03659 425 CDD bHLH_AtBPE_like 250 335 - -
Aip06g03659 425 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 260 310 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03659 Aip-Chr6 134047000 134051128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03659 1 425 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 41.339 6.15e-79 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip06g03659 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03659 - - gmx:100794464 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03659 06 134047000 134051128 Aip06g03659 06 134047000 134051128 ECH