Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03645 atgtataataataataATAATAATAGTAATAATAATAATAATAATTTGAGGCCAAGTTTCTTGTACTCATCAACTACTAATAGTGCTTCTCTTCATAATCATCATCATCACAACCAAGTTCCAATCAACACCTTTAATCTTCAATCTTCAGATCATCATCAACAATGTTTTGAATCTGATGATAATCATCAAGTTCTTGTTGTGAAGACTGAAGCAATTAGCACCACCCCACATCATCATCTTCAAACTCCAATTCTTCATCACTATCCTTTATTGAGGGGAAACAATAATAATATGCATCATCCCCACCATAGCCAGCAACACCATCATCATCAACAAGGAGGGAATTACAACCAAAGCTCCAATAATGGTGTTGGTGAAGTTGAAGCCATCAAAGCCAAAATCATTGCTCATCCTCACTACTCTAATCTCTTAGAAGCTTACATGGATTGCCAAAAGGTTGGAGCTCCGCCGGAAGTGGTGGCGCGACTGGTGGCGGCGAGGCAGGAATTTGAGGCACGGCAACGATCTTCAGTTAGCTCAAGGGAAAGTTACAATAAGGACCCAGAACTTGACCAATTCATGTATAGAGAGGAATTAACAAGGCCTATACAAGAGGCTATGGATTTCATGAGAAGAATAGAAACACAGCTAAATATGCTTTGCAATGGACCCGTTAGGATCTTCCAAGAAACAGAAGTAGCAGAGATTGATCCAAGAGCTGAAGACCGTGAACTGAAGAACCATTTGCTTAGAAAATATAGTGGTTACTTGAGTAGCCTTAAGCAAGAACTCTCCAAGAAGAAGAAGAAAGGAAAACTGCCTAAGGAAGCTAGGCAGAAGCTCCTTAACTGGTGGGAACTTCATTACAAATGGCCTTATCCTTCGGAATCAGAGAAGGTGGCACTGGCAGAATCAACAGGTTTGGACCAAAAACAAATAAACAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAACCCTCTGAAGACATGCAGTTCATGCTCCATGATCAACACCTCTTAATTAACTATTTGGAGCTAGCTTTAATTTCTGTACCATATAAGTTTGTAAGGATCCTATAA 1086 0.3923 MYNNNNNNSNNNNNNLRPSFLYSSTTNSASLHNHHHHNQVPINTFNLQSSDHHQQCFESDDNHQVLVVKTEAISTTPHHHLQTPILHHYPLLRGNNNNMHHPHHSQQHHHHQQGGNYNQSSNNGVGEVEAIKAKIIAHPHYSNLLEAYMDCQKVGAPPEVVARLVAARQEFEARQRSSVSSRESYNKDPELDQFMYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFQETEVAEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMLHDQHLLINYLELALISVPYKFVRIL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03645 361 Pfam KNOX1 domain 130 172 IPR005540 GO:0003677|GO:0005634
Aip06g03645 361 SMART KNOX2_2 181 223 IPR005541 GO:0003677|GO:0005634
Aip06g03645 361 Pfam Homeobox KN domain 285 324 IPR008422 GO:0003677|GO:0006355
Aip06g03645 361 ProSiteProfiles ELK domain profile. 245 265 IPR005539 GO:0003677
Aip06g03645 361 SUPERFAMILY Homeodomain-like 266 339 IPR009057 -
Aip06g03645 361 Pfam KNOX2 domain 186 222 IPR005541 GO:0003677|GO:0005634
Aip06g03645 361 Pfam ELK domain 245 266 IPR005539 GO:0003677
Aip06g03645 361 SMART HOX_1 267 332 IPR001356 GO:0003677
Aip06g03645 361 ProSitePatterns 'Homeobox' domain signature. 303 326 IPR017970 GO:0000981|GO:0006355
Aip06g03645 361 ProSiteProfiles 'Homeobox' domain profile. 265 328 IPR001356 GO:0003677
Aip06g03645 361 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 9 343 - -
Aip06g03645 361 Gene3D - 262 335 - -
Aip06g03645 361 CDD homeodomain 277 329 IPR001356 GO:0003677
Aip06g03645 361 SMART ELK_2 245 266 IPR005539 GO:0003677
Aip06g03645 361 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 9 343 - -
Aip06g03645 361 MobiDBLite consensus disorder prediction 1 34 - -
Aip06g03645 361 MobiDBLite consensus disorder prediction 94 123 - -
Aip06g03645 361 SMART KNOX1_2 129 173 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03645 Aip-Chr6 133859082 133871565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03645 54 338 Homeobox Transcription Factor Family AT4G08150 60.625 8.82e-116 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Aip06g03645 KNOX1 2.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03645 - - gmx:100800822 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03645 06 133859082 133871565 Aip06g03645 06 133859082 133871565 ECH