Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2654 ATGCTGTTGGAGATGTTGATTAGCGTTCAAGGTTGCACAAATTCTGGCGCAAGATCTTCAAATGTTTCAATCATGTTGAACAACATAAATAACAGTAGCCATTCATGGCTGTGGTTTGTGGCGAGGCACTACTCTAGGATTCGTCCTCCAAAGCCTGTCCCTGTTGAATCAGTGATCAGGGTGTCCAACAACGTTGCTCGTTTGGGTTCTCGGAAAGAAGGCCCGAAGCCGAGGCAACTACTGTCTTTGCCACCTTTTCCTGGTCACCCTTTGCCCGGAAGGAACTCAAATGAAAGTTTTCAAGATGGGCAGCAACATGATGGTTATGTCACTGCTGTTAATTGGATCAAGTATTACTTCAAAGGCATATTGGGTTCTGTCATTGAGTCTCATTTCAGGGAGGGTCTTGTCCAAATGGAGGACTCAATTTCTGACAATAATTTATCTCAGAATGAAGAGCCAAGGAGACCCTTGCGAAAGATTAGACCTAATGAAGTAATGAAGCAAGGGGCAAGAATTCATATCCCTGTGTCAATTGCCGAGGCTAGGATTTCCAAAAGATATGATGCTATACCAAGTGGAACACTATATCCCAATGCTGATGAAATTAAGTATTTGCAAAGGCTTGTCATTTATAAGGACTCGGCTATCATGGTGCTAAATAAACCCCCAAAATTGCCGGTTAAGGGGAATCTGCCGGTTCATAACAGCATGGATGCATTAGCAGCTGCAGCACTATCCTATGATTATGATGAGGGTCCTAAACTGGTCCACCGTCTTGACAGGGAGACCAGTGGCATCATTTTATTTGGCAGAAAAGAACAAAGTGTGTCTCACCTGCAGTGGCTGTTCAGTAACATAAACAATGCAAAATCTTCTAGTAAGGTTTGGAATGATGCATGTGAATCTACATATCAGAGGTATTGGGCACTAGTCATAGGGACTCCCAAGGAGAAGGAAGGTGTAATTTGTGCTCCCCTTAGAAAGGTGCTCTTGGATGATGGGAAGACAGAGAGGGTCGTATTAGCTCACCATTCAAGTATGGAACCTCGCCAAGAGGCTGTAACTGAATATCGAGTCCTTGGTCCAAAGATAAATGGATGCTCCTGGGTTGAGCTGCGACCACTTACGTACCGGAAGCATCAGTTGCGTGTCCATTGTGCTGAAGCACTTGGCACTCCGATAGTGGGCGATTACAAGTATGGTTGGTTTGTACACAGTCGTTGGAAACAAATGCCCCGAGTTGATGTCGAGCCAACGACTGGAAAACCATACAAGATGAGGAGACCAGAAGGCCTAGATGTTCAGAAGGGAAGTGTATTATCCAAGGTCCCCCTATTGCATCTTCACTGCAGAGAACTTGTACTTCCCAACATTGCTAAGTTTCTTCATGTTTTCAATAAGAGTTCAGGAGAACTGCCCCGTTCACTTAGCGCAGAACCCGATGTTCTTCGCTTTGTGGCAACGATGCCGTCGCATATGAAAATTAGTTGGAATCTTATGTCATCATATTTAGTCTGA 1521 0.4451 MLLEMLISVQGCTNSGARSSNVSIMLNNINNSSHSWLWFVARHYSRIRPPKPVPVESVIRVSNNVARLGSRKEGPKPRQLLSLPPFPGHPLPGRNSNESFQDGQQHDGYVTAVNWIKYYFKGILGSVIESHFREGLVQMEDSISDNNLSQNEEPRRPLRKIRPNEVMKQGARIHIPVSIAEARISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIMVLNKPPKLPVKGNLPVHNSMDALAAAALSYDYDEGPKLVHRLDRETSGIILFGRKEQSVSHLQWLFSNINNAKSSSKVWNDACESTYQRYWALVIGTPKEKEGVICAPLRKVLLDDGKTERVVLAHHSSMEPRQEAVTEYRVLGPKINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPRVDVEPTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLHVFNKSSGELPRSLSAEPDVLRFVATMPSHMKISWNLMSSYLV* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2654 506 Gene3D Pseudouridine synthase 202 465 - -
Ahy6g2654 506 MobiDBLite consensus disorder prediction 69 103 - -
Ahy6g2654 506 Pfam RNA pseudouridylate synthase 217 388 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Ahy6g2654 506 CDD PseudoU_synth_RluA_like 217 413 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Ahy6g2654 506 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 35 503 - -
Ahy6g2654 506 ProSitePatterns Rlu family of pseudouridine synthase signature. 257 271 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Ahy6g2654 506 PANTHER RNA PSEUDOURIDINE SYNTHASE 3, MITOCHONDRIAL 35 503 - -
Ahy6g2654 506 SUPERFAMILY Pseudouridine synthase 202 459 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2654 Ahy-Chr6 111854962 111861101 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g2654 - - pvu:PHAVU_001G032500g 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3391 16 150866370 150872437 Ahy6g2654 6 111854962 111861101 hybridization