Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3439 ATGTTCCAAATTAGTAACAACTTAAAAGATTCAGAAGAGAAAACAAAGAAAGAAAGAAAAGCAATGGCATTTGCAGGAACAACTCAGAAATGTATGGCTTGTGACAAAACCGTTTACCTTGTTGATAAGTTGACTGCGGATAACCGAATTTTCCACAAAGCTTGCTTCCGCTGCCACCACTGCAAAGGAACTCTCAAGCTGAGCAACTACAACTCTTTTGAGGGAGTTCTTTACTGTAGGCCGCACTTTGATCAACTTTTCAAGAGAACTGGTAGCCTTGAGAAAAGCTTCGAAGGAACACCAAAAGTTGCTAAACCAGAGAAAAACACTGATGAGAAACCTGCAGCAGCAAAAGTTTCAAGTATGTTTGGTGGAACAAGAGATAAATGTGCTGGTTGCCAAAAAACTGTGTATCCAACTGAGAAGGTCACTGTGAATGGGACTCCTTACCATAAGAGTTGCTTCAAGTGCTGCCATGGAGGATGTGTTATCAGCCCTTCCAATTACATCGCGCACGAGGGAAAACTCTACTGCAAACACCACCATGTCCAACTAATCAAGGAGAAGGGAAACTTGAGTCAGCTTGAAGGTGATCATGAGAAGAGTGCAGTGCAAGCGAAAATCAATGGCGAAGAAGTCACGGCTGAGACATAA 654 0.4251 MFQISNNLKDSEEKTKKERKAMAFAGTTQKCMACDKTVYLVDKLTADNRIFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKVAKPEKNTDEKPAAAKVSSMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHVQLIKEKGNLSQLEGDHEKSAVQAKINGEEVTAET* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3439 217 CDD LIM1_SF3 27 89 - -
Ahy16g3439 217 Pfam LIM domain 130 184 IPR001781 -
Ahy16g3439 217 Pfam LIM domain 31 85 IPR001781 -
Ahy16g3439 217 Gene3D Cysteine Rich Protein 125 194 - -
Ahy16g3439 217 Gene3D Cysteine Rich Protein 25 95 - -
Ahy16g3439 217 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 24 56 - -
Ahy16g3439 217 PANTHER OS06G0237300 PROTEIN 22 203 IPR045268 GO:0051015
Ahy16g3439 217 SMART lim_4 129 181 IPR001781 -
Ahy16g3439 217 SMART lim_4 30 82 IPR001781 -
Ahy16g3439 217 ProSitePatterns LIM zinc-binding domain signature. 31 65 IPR001781 -
Ahy16g3439 217 ProSiteProfiles LIM domain profile. 128 188 IPR001781 -
Ahy16g3439 217 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 156 195 - -
Ahy16g3439 217 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 122 155 - -
Ahy16g3439 217 CDD LIM2_SF3 130 190 - -
Ahy16g3439 217 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 57 97 - -
Ahy16g3439 217 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 22 203 - -
Ahy16g3439 217 ProSiteProfiles LIM domain profile. 29 89 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3439 Ahy-Chr16 151663575 151665488 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Ahy16g3439 LIM 2.10E-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3439 K09377 - gmx:100499947 400.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3439 16 151663575 151665488 Ahy16g3439 16 151663575 151665488 ECH
Ahy16g3439 16 151663575 151665488 Ahy6g2696 6 112446263 112447792 hybridization