Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3396 ATGGGAAGGGCTCCTTGCTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGTCTCCTGAAGAAGATGCTAAGCTCAAATCATACATACAACAACATGGCACTGGTGGCAATTGGATTGCTTTGCCTCCAAAAATTGGATTGAAGCGTTGTGGGAAGAGTTGCCGTCTAAGGTGGTTGAACTATCTTCGCCCTAATCTCAAGCATGGTGATTTCTCTCAAGAAGAAGACAACATTATTTGTAGCCTCTATGTTAGTATTGGAAGCAGGTGGTCAGTTATTGCTGCTCAATTACCAGGAAGAACTGATAATGACATAAAGAACTATTGGAACACAAGGCTCAAAAAGAAGCTTCTTGGCAATAACAAGAACCGCCGCAACAAAGAACAGCAACAATTACAAGCATGTAGCAATAATAATGGAATCAACAAGCAACAAGAAACATCATCAATTAATGGAGGGAGTGTTATTATTGGTGATGATTCCTTATCTTCCTTATTGGTTCATGAAAATAGTAGTACTACTCATCAACAACAACAACAACAACAACAATGTTATTGGCCACACTTCATGCCAGTGTTGCCAATACCAAATTTGCCATATAGCACAACAAATAATAACCAACAATTCTACTTAGGATCTTCTTTCAATGACCAAGATTCCATCAAGAAACTACTTATCAAGCTTGGAGGGAGATTCCATAATGATGTTGATTATCATAATTACCATCCTACCCTTGGTGATGGATTATTGAATCATCTTCATCAATCACAAGGTACTACTACTTATTATTCTAATAATTCAACACAACAACAAGTACTTTATCATCAAGAACAAATACAATTTGATGATGGTAATAATGGACTTCATCATGATGAAATGGTGCAAAGAAAAGGAAACCTCAACAATGAAATTGAAGAAGAAATGGTGGGTAATACTAATTTTATTCCACAAAGATTATTAAATAATGGGTTGGGGTTCTTCCATGGAGACATGGTTTTCAGTGAGGATAAGATCATAATAGGCTCTACTACTACTAGGCCTAATTGGGGTGAGAATAGTAGTGGCAATTCAGTAATTTACCACCCTCTTATTTCTTCTTCAAATTACCAAGAAGATCAAGGTGTAAGGCCATCAGAAGAATGTGCTTTGCAAGAGTATAGCACTATAGCCACCATGAGGACCAATAGTAGCAATAGCATGCTTCATGTACAATAA 1215 0.3712 MGRAPCCDKANVKKGPWSPEEDAKLKSYIQQHGTGGNWIALPPKIGLKRCGKSCRLRWLNYLRPNLKHGDFSQEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGNNKNRRNKEQQQLQACSNNNGINKQQETSSINGGSVIIGDDSLSSLLVHENSSTTHQQQQQQQQCYWPHFMPVLPIPNLPYSTTNNNQQFYLGSSFNDQDSIKKLLIKLGGRFHNDVDYHNYHPTLGDGLLNHLHQSQGTTTYYSNNSTQQQVLYHQEQIQFDDGNNGLHHDEMVQRKGNLNNEIEEEMVGNTNFIPQRLLNNGLGFFHGDMVFSEDKIIIGSTTTRPNWGENSSGNSVIYHPLISSSNYQEDQGVRPSEECALQEYSTIATMRTNSSNSMLHVQ* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3396 404 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Ahy16g3396 404 CDD SANT 71 113 IPR001005 -
Ahy16g3396 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Ahy16g3396 404 Gene3D - 7 68 - -
Ahy16g3396 404 SMART sant 13 64 IPR001005 -
Ahy16g3396 404 SMART sant 67 115 IPR001005 -
Ahy16g3396 404 PANTHER OS09G0431300 PROTEIN 1 258 - -
Ahy16g3396 404 CDD SANT 16 62 IPR001005 -
Ahy16g3396 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Ahy16g3396 404 PANTHER OS09G0431300 PROTEIN 1 258 - -
Ahy16g3396 404 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Ahy16g3396 404 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Ahy16g3396 404 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Ahy16g3396 404 Gene3D - 70 145 - -
Ahy16g3396 404 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3396 Ahy-Chr16 150997104 150999289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3396 1 227 MYB Transcription Factor Family AT3G49690 56.579 2.74e-80 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy16g3396 Myb_DNA-binding 2.20E-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3396 K09422 - gmx:100815092 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3396 16 150997104 150999289 Ahy16g3396 16 150997104 150999289 ECH
Ahy16g3396 16 150997104 150999289 Ahy6g2659 6 111996204 111998222 hybridization
Ahy16g3396 16 150997104 150999289 Ahy17g3189 17 133839606 133841529 PCT
Ahy16g3396 16 150997104 150999289 Ahy8g0899 8 17391975 17393770 PCT
Ahy17g3189 17 133839606 133841529 Ahy16g3396 16 150997104 150999289 PCT
Ahy8g0899 8 17391975 17393770 Ahy16g3396 16 150997104 150999289 PCT