Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3393 ATGGAGATGGAGGAATACCCTAATAATAATAATAATAGTAATAATAATAATAATAATTTGAGGCCAAGTTTCTTGTACTCATCAACTACTAATAGTGCTTCTCTTCATAATCATCATCATCACAACCAAGTTCCAATCAACACCTTTAATCTTCAATCTTCAGATCATCATCAACAATGTTTTGAATCTGATGATAATCATCAAGTTCTTGTTGTGAAGACTGAAGCAATTAGCACCACCCCACATCATCATCTTCAAACTCCAATTCTTCATCACTATCCTTTATTGAGGGGAAACAATAATAATATGCATCATCCCCACCATAGCCAGCAACACCATCATCATCAACAAGGAGGGAATTACAACCAAAGCTCCAATAATGGTGTTGGTGAAGTTGAAGCCATCAAAGCCAAAATCATTGCTCATCCTCACTACTCTAATCTCTTAGAAGCTTACATGGATTGCCAAAAGGTTGGAGCTCCGCCGGAAGTGGTGGCGCGACTGGTGGCGGCGAGGCAGGAATTTGAGGCACGGCAACGATCTTCAGTTAGCTCAAGGGAAAGTTACAATAAGGACCCAGAACTTGACCAATTCATGGAAGCTTACTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCTATACAAGAGGCTATGGATTTCATGAGAAGAATAGAAACACAGCTAAATATGCTTTGCAATGGACCCGTTAGGATCTTCCAAGATGAGAAATGTGAAGGAGAAGGAGGTGGTTCATCGGAAGAGGAACAAGAGAACAGTGGTGGAGAAACAGAAGTAGCAGAGATTGATCCAAGAGCTGAAGACCGTGAACTGAAGAACCATTTGCTTAGAAAATATAGTGGTTACTTGAGTAGCCTTAAGCAAGAACTCTCCAAGAAGAAGAAGAAAGGAAAACTCCCTAAGGAAGCTAGGCAGAAGCTCCTTAACTGGTGGGAACTTCATTACAAATGGCCTTATCCTTCGGAATCAGAGAAGGTGGCACTGGCAGAATCAACAGGTTTGGACCAAAAACAAATAAACAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAACCCTCTGAAGACATGCAGTTCATGGTGATGGATGGCCTTCATGCTCATCAGAAAGCAACCCTCTATATGGATCCTCATTATTTGCCTGATCCTCACTACCGTCTAGCTCCATGA 1197 0.4119 MEMEEYPNNNNNSNNNNNNLRPSFLYSSTTNSASLHNHHHHNQVPINTFNLQSSDHHQQCFESDDNHQVLVVKTEAISTTPHHHLQTPILHHYPLLRGNNNNMHHPHHSQQHHHHQQGGNYNQSSNNGVGEVEAIKAKIIAHPHYSNLLEAYMDCQKVGAPPEVVARLVAARQEFEARQRSSVSSRESYNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFQDEKCEGEGGGSSEEEQENSGGETEVAEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHAHQKATLYMDPHYLPDPHYRLAP* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3393 398 Gene3D - 296 369 - -
Ahy16g3393 398 Pfam ELK domain 279 300 IPR005539 GO:0003677
Ahy16g3393 398 SMART HOX_1 301 366 IPR001356 GO:0003677
Ahy16g3393 398 MobiDBLite consensus disorder prediction 245 276 - -
Ahy16g3393 398 ProSitePatterns 'Homeobox' domain signature. 337 360 IPR017970 GO:0000981|GO:0006355
Ahy16g3393 398 CDD homeodomain 311 363 IPR001356 GO:0003677
Ahy16g3393 398 Pfam KNOX2 domain 190 235 IPR005541 GO:0003677|GO:0005634
Ahy16g3393 398 MobiDBLite consensus disorder prediction 1 38 - -
Ahy16g3393 398 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 3 390 - -
Ahy16g3393 398 ProSiteProfiles ELK domain profile. 279 299 IPR005539 GO:0003677
Ahy16g3393 398 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 390 - -
Ahy16g3393 398 SMART KNOX1_2 133 177 IPR005540 GO:0003677|GO:0005634
Ahy16g3393 398 SMART ELK_2 279 300 IPR005539 GO:0003677
Ahy16g3393 398 SUPERFAMILY Homeodomain-like 300 373 IPR009057 -
Ahy16g3393 398 ProSiteProfiles 'Homeobox' domain profile. 299 362 IPR001356 GO:0003677
Ahy16g3393 398 Pfam KNOX1 domain 134 176 IPR005540 GO:0003677|GO:0005634
Ahy16g3393 398 SMART KNOX2_2 185 236 IPR005541 GO:0003677|GO:0005634
Ahy16g3393 398 MobiDBLite consensus disorder prediction 98 127 - -
Ahy16g3393 398 Pfam Homeobox KN domain 319 358 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3393 Ahy-Chr16 150935808 150946557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3393 60 398 Homeobox Transcription Factor Family AT4G08150 66.570 5.44e-147 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Ahy16g3393 KNOX2 5.00E-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3393 - - gmx:100800822 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3393 16 150935808 150946557 Ahy16g3393 16 150935808 150946557 ECH
Ahy16g3393 16 150935808 150946557 Ahy6g2657 6 111953700 111965268 hybridization