Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3390 ATGGGAAGAGCTCCTTGTTGTGACAAAGCAAATGTGAAGAGAGGACCATGGTCTCCTGATGAGGATGCAACACTCAAGAACTATCTTCACACTCATGGCACTGGAGGAAATTGGATTGCATTACCAAGAAAAGCTGGTCTAAGGAGGTGTGGGAAGAGTTGCCGTCTAAGGTGGCTGAATTATCTAAGGCCAGATATAAAACATGGAGGATTTACTGAACAAGAGGATCAAATCATTTGCACTCTCTATACTCAAATGGGAAGCAGATGGTCTGCAATAGCATCTCAACTTCCTGGCAGAACAGACAATGATGTCAAAAACTATTGGAACACCAAGCTCAAGAAGAAGCTAATGGCAGGAAAAGTAATTTCCCCTAATAATAATAATAATAATAAAACATTATTGACTACTCAACAAAACTCAGATTTTCAAGATAATAAAAATTGTTCACCACCCTCATCATCATCATCATTAGTGCATCTTCCAATTTTAAGCAATGATATTAATAATTTTAGTTCTAACCTAAGTCTTGACCTAATTCATCAACAACTCTATAGTCCACAATTTATGAATTTAGAAATTGATGGTGCAAATTCAAGGAGCAACAAGAACAATAATAGTAGTAATATTGAAGGTTCAACTTCTTCTTCATCACTTGCATTATTGGACTACAAGGGTGGATCATCACTTCTAGAAGAAGAAAAACAACATGGTGTTGGTGATGATAATGATGAATCTAATAAGGAATTCTTGATGGATTTAGGGTTTGATGGAGTTCCTACTTATTATGATATTGTTAATGGTCTTAATTGTCATGAGAGAGTAGTTGGTGAGTTTTCTCAAAGTATTAGTAGTTGTTGTTACTCTGAGTGGGTTGATTTCAACTGTGCTGAAATTAAGCCACATTGA 909 0.3586 MGRAPCCDKANVKRGPWSPDEDATLKNYLHTHGTGGNWIALPRKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEQEDQIICTLYTQMGSRWSAIASQLPGRTDNDVKNYWNTKLKKKLMAGKVISPNNNNNNKTLLTTQQNSDFQDNKNCSPPSSSSSLVHLPILSNDINNFSSNLSLDLIHQQLYSPQFMNLEIDGANSRSNKNNNSSNIEGSTSSSSLALLDYKGGSSLLEEEKQHGVGDDNDESNKEFLMDLGFDGVPTYYDIVNGLNCHERVVGEFSQSISSCCYSEWVDFNCAEIKPH* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3390 302 CDD SANT 71 113 IPR001005 -
Ahy16g3390 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Ahy16g3390 302 Gene3D - 7 68 - -
Ahy16g3390 302 PANTHER OS09G0431300 PROTEIN 1 225 - -
Ahy16g3390 302 CDD SANT 16 62 IPR001005 -
Ahy16g3390 302 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Ahy16g3390 302 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Ahy16g3390 302 MobiDBLite consensus disorder prediction 196 215 - -
Ahy16g3390 302 PANTHER OS09G0431300 PROTEIN 1 225 - -
Ahy16g3390 302 SMART sant 13 64 IPR001005 -
Ahy16g3390 302 SMART sant 67 115 IPR001005 -
Ahy16g3390 302 Gene3D - 70 150 - -
Ahy16g3390 302 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Ahy16g3390 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Ahy16g3390 302 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Ahy16g3390 302 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3390 Ahy-Chr16 150860555 150863343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3390 1 118 MYB Transcription Factor Family AT5G65790 80.508 3.11e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy16g3390 Myb_DNA-binding 9.30E-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g3390 K09422 - gmx:100789985 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3390 16 150860555 150863343 Ahy16g3390 16 150860555 150863343 ECH
Ahy16g3390 16 150860555 150863343 Ahy6g2653 6 111848961 111851935 hybridization