Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0429 ATGGAGGAATACACTAATAACAGCAATCATCATCATCACTTGAGTGAAAACACCACAGGTCCAAGTCCAAGGCCAAATTTCTTGTACTCTTCAGCTAGTGGTGGAAACCGAAACCAAAACCAAGACCATAACCATCATCATCATCATCAGTTTCCAATGAACACTTTTCATCTTCAATCGGGTGGTGGATCAGATCATTGCTTTCAGTCTGATCATCAAGTAGTGTCACCACACCCTTCTTCTGTGAAATCTGAAGCCAGCACTTCTCAGCTTCACGCTCCTATTTTCCACTACCCTTTAATGAGAGGAAATAATCTTCACCATAACACTACTATGCATCATCATCAAGGTGGAGGAGGGAGCCCAACAACATCAACCGAAGTTGAAGCCATCAAAGCTAAAATCATTGCTCACCCGCAGTACTCCAATCTCTTAGGAGCCTACATGGATTGTCAAAAGATAGGAGCTCCACCTGAAGTGGTGGCGCGTATGGTTGCGGCTAAGCAAGAGTTTGAGGCACGGCAAAGATCTTCTTCATCTGGTTCAAGGGAAAATTCAAAAGATCCTGAACTTGACCAATTCATGGAAGCATACTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCCATTCAAGAGGCTATGGATTTCATGAGAAGGGTAGAAACTCAGCTAAATATGCTTTGCAATGGACCCGTGCGGATCTTCTCTGATGATAAATGTGAAGGTGGTGGTTCATCAGAGGAGGATCAAGACAATAGTGGAGGAGAAACAGAACTTCCTGATATTGATCCCCGAGCAGAAGACCGTGAACTTAAAAACCACTTGTTAAGGAAGTACAGTGGTTACTTAAGTAGTCTTAAGCAAGAACTCTCCAAGAAGAAAAAGAAAGGGAAACTTCCCAAAGATGCTAGGCAAAAACTACTTAACTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCATTGGCTGAATCAACTGGTTTGGACCAAAAGCAAATAAATAACTGGTTCATAAACCAAAGGAAGAGGCATTGGAAACCATCTGAAGACATGCAATTTATGGTGATGGATGGTCTGCATCCGCAGAGTGCAACTCTCTATATGGATGGTCACTACATGCCAGATGGTCACTACCGTCTAGGCCCATGA 1176 0.4294 MEEYTNNSNHHHHLSENTTGPSPRPNFLYSSASGGNRNQNQDHNHHHHHQFPMNTFHLQSGGGSDHCFQSDHQVVSPHPSSVKSEASTSQLHAPIFHYPLMRGNNLHHNTTMHHHQGGGGSPTTSTEVEAIKAKIIAHPQYSNLLGAYMDCQKIGAPPEVVARMVAAKQEFEARQRSSSSGSRENSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRVETQLNMLCNGPVRIFSDDKCEGGGSSEEDQDNSGGETELPDIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSATLYMDGHYMPDGHYRLGP 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0429 391 SMART KNOX1_2 129 173 IPR005540 GO:0003677|GO:0005634
Aed6g0429 391 SMART ELK_2 273 294 IPR005539 GO:0003677
Aed6g0429 391 ProSiteProfiles 'Homeobox' domain profile. 293 356 IPR001356 GO:0003677
Aed6g0429 391 Pfam Homeobox KN domain 313 352 IPR008422 GO:0003677|GO:0006355
Aed6g0429 391 SUPERFAMILY Homeodomain-like 294 369 IPR009057 -
Aed6g0429 391 ProSitePatterns 'Homeobox' domain signature. 331 354 IPR017970 GO:0000981|GO:0006355
Aed6g0429 391 Pfam KNOX2 domain 186 231 IPR005541 GO:0003677|GO:0005634
Aed6g0429 391 Pfam KNOX1 domain 130 172 IPR005540 GO:0003677|GO:0005634
Aed6g0429 391 Pfam ELK domain 273 294 IPR005539 GO:0003677
Aed6g0429 391 MobiDBLite consensus disorder prediction 172 191 - -
Aed6g0429 391 Gene3D - 298 360 - -
Aed6g0429 391 MobiDBLite consensus disorder prediction 11 39 - -
Aed6g0429 391 ProSiteProfiles ELK domain profile. 273 293 IPR005539 GO:0003677
Aed6g0429 391 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 383 - -
Aed6g0429 391 SMART KNOX2_2 181 232 IPR005541 GO:0003677|GO:0005634
Aed6g0429 391 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 383 - -
Aed6g0429 391 CDD homeodomain 305 357 IPR001356 GO:0003677
Aed6g0429 391 MobiDBLite consensus disorder prediction 241 268 - -
Aed6g0429 391 MobiDBLite consensus disorder prediction 1 86 - -
Aed6g0429 391 MobiDBLite consensus disorder prediction 53 86 - -
Aed6g0429 391 SMART HOX_1 295 360 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0429 Aed-Chr6 3766426 3772387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0429 64 391 Homeobox Transcription Factor Family AT4G08150 70.659 1.51e-153 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Aed6g0429 KNOX2 1.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0429 - - gmx:100807602 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0429 6 3766426 3772387 Aed6g0429 6 3766426 3772387 ECH