Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0422 ACTGACTCCGTTCCAAATTTCTCTGCCAGCGAGGCAGAGAGAGAAACTAGAGCCAGAGAGAGAGAGAGAGAGGAGCGAGCGAACACGAACACATCTTCATCCGTCTCGTCGTCGTTTAGCCCTCGCTTGTCTCCGGCGAGCTTTCTCCGATCAATTTTTTCCGAAATGGCGGATCCGTACTTTCTCGGTTGGATTCTGTGTTCCGTTCTAAGCCTCTTCGCGCTCTACAGCCTGGCCTTCGGCGGAGCGAGGCATCGCCGCGCTTTGCCGGAGAAGAGGATTGAGTTGTCGGAGACCGTGACGACCTCCGTCAGAGAATGTAGATCGGAGAAACGCAACCCCGACGCTGACGATGGGCGTCGAGTACACGTCATTGAAAGAGACCTGAGTGAGCCTGATCGAATTGTTGGAGAGTTGCTACAACCCGGTGGCTATCTCAAATTAATTGAGCTGGGACTTGAAGATTGTGTGGACAAAATTGATGCCCAACAAGTATTTGGTTATGCCCTTTTCAAGGATGGGAAGCATACTCGTCTCTCTTACCCCTTGGCGAAGTTTCACTCTGATGTCTCTGGCAGAAGCTTTCACAATGGACGCTTTATTCAGAGGATGCGGGAGAAAGCTGCCTCCCTTTCCAATGTACGATTGGAGCAAGGAACAGTCACTTCCCTAGTTGAAGAGAAGGGGACAATTAAAGGTGTGCAATATAAGAACAAAGATGGTCAGGAATTGACAACATATGCACCTCTTACCATTGTTTGTGATGGCTGCTTCTCAAACTTACGCCGCTCTCTTTGTAATCCTAAGCCTGTGGCATCCACCATAAACACATTGGCAGGTGCTCTATACAAAGTTTTTTGTGCATCCCCTGATCAGGCAAGGAAGGAAATGCGCCAAGCTTGCTTCGATTATCTCAGCCTTGGAGGCCTATTCTCGGAAGGACCAGTCTCTTTACTTTCGGGATTAAACCCTCGTCCCTTGAGCTTGGTTCTCCATTTCTTCGCTGTTGCAGTATACGGCGTTGGCCGTTTATTGTTGCCGTTTCCTTCACCTAAGCGAATGTGGATCGGAGCCCGATTAATCTCTGGTGCATCTGCAATCATTCTCCCCATAATTAAGGCTGAAGGGATTCGTCAGATGTTTTTCCCTGCCACTGTTCCAGCTTATTACAGATCTCCTCCGGTTGCACAATAG 1194 0.4916 TDSVPNFSASEAERETRAREREREERANTNTSSSVSSSFSPRLSPASFLRSIFSEMADPYFLGWILCSVLSLFALYSLAFGGARHRRALPEKRIELSETVTTSVRECRSEKRNPDADDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVDKIDAQQVFGYALFKDGKHTRLSYPLAKFHSDVSGRSFHNGRFIQRMREKAASLSNVRLEQGTVTSLVEEKGTIKGVQYKNKDGQELTTYAPLTIVCDGCFSNLRRSLCNPKPVASTINTLAGALYKVFCASPDQARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAVYGVGRLLLPFPSPKRMWIGARLISGASAIILPIIKAEGIRQMFFPATVPAYYRSPPVAQ 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0422 397 MobiDBLite consensus disorder prediction 12 28 - -
Aed6g0422 397 PANTHER SQUALENE MONOOXYGENASE-RELATED 269 397 - -
Aed6g0422 397 SUPERFAMILY FAD/NAD(P)-binding domain 118 379 IPR036188 -
Aed6g0422 397 MobiDBLite consensus disorder prediction 29 43 - -
Aed6g0422 397 PANTHER SQUALENE MONOOXYGENASE 56 269 IPR040125 GO:0004506|GO:0016126
Aed6g0422 397 PANTHER SQUALENE MONOOXYGENASE-RELATED 56 269 - -
Aed6g0422 397 Gene3D - 116 311 IPR036188 -
Aed6g0422 397 MobiDBLite consensus disorder prediction 1 43 - -
Aed6g0422 397 Pfam Squalene epoxidase 269 355 IPR013698 GO:0004506|GO:0016021|GO:0050660
Aed6g0422 397 PANTHER SQUALENE MONOOXYGENASE 269 397 IPR040125 GO:0004506|GO:0016126
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0422 Aed-Chr6 3688157 3692594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0422 269 392 Miscellaneous Gene Families AT4G37760 80.645 1.50e-64 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0422 K00511 - gmx:100804406 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0422 6 3688157 3692594 Aed6g0422 6 3688157 3692594 ECH
Aed6g0422 6 3688157 3692594 Aed4g1612 4 20859059 20865164 PCT