Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0399 ATGGTGGTACTGTTGTCGGAGTCGGAGAATGAACACGACGAGGAGCCCGGCGAGGTTGTCGATTCGGCACCGCCGCAGAAGGTTGACGAAGAGAGACAATTCACCAGTTTCAAGAAGAAGCTTCTCAAACCTGGACACGGTTGGGAAACCCCCAACTTCGATGACCTCGTCACTGTTCGCTGTGTTGGTACATTGCTCGATGGAGCGACGGCGTTTGATTCCGCTAGGGAGAGGGATCAAGCTAGGACTTTCACTCTTGGAAAAGGTGACATTGCTGCTGGGTTGGACCGTGCGATTATCACTATGAAGAAAGGGGAGGTGGCATTGTTCACGTTGCCCCGAGATGGTGGTGATGTTTTGCAGAACTCCGACGGCGACTCGGTTGTGCAGTTTGAGGTAGAGCTCGTTTCGTGGATCACAGTGGTGGATGTTTGCAGAAATGGTGGGGTTCTCAAGAAGATTATGGAGAAGGGGACTGGCAATGAGCGCCCTGGTGATCTTGATGAAGTGCTTGTGAAGTATCGGGTGGTGCTTGATGATGACACTGTTGTTGCAGAGACGCCGGTAGGAGGAGTTGAGTTTCATGTGAAGGATGGTCATCTTTTTCCGATATTGCAGAAAGTAATCATGACTATGACAAGGGGAGAGAAGGCTGAATTAATTGTCCAACCTCAGTATGCCTTTGGGGAGAAGGGGAGAGAAGCTGGCAGTGGGCTCTGTTCAATTCCTCTGAAATCAGTGCTGCATGTTAGTATTGAATTGGTATCCTTCAAGCCTGTCATAGATGTTACTGGTGACTCCAAGGTGATTAAAAAGATTTTGCAAGAAGGGGAGGGTGCTTTCACTGCCAATGAGAATGCAAATGTTACTGAACAAGTGATTACTGGTCTAGACCGAGCTGTGGCAACAATGAAGAAGGGTGAGAGGGCGATCATTAGCATACATCCTGATTATGCATTTGGAAATGTTGAAGTGAGAGGAGATCTTGCTATTGTGCCACCAGGCTCAAATGTAGTCTATGACGTTGAGTTGATGGATTTTATTAGGGAGAAAGCACCATGGGAATTGAATAGTAATGAGAAAATTGGGGTGGCTGGGAGGATGAAAGAAGAAGGAAATGTGTTATTTAAAGGTGGAAATTATCTGCAAGCAAGGAAGAAATATAGAAAGGCTGCTGATTTTGTTTATGAAGATGGATCCGAAGTGGTTTTTGAGCAAAAGCAAGCTATGACACTGAGAGTGTCATGCTGGTTGAATGGTGCAGCTTGTAGCCTTAAACTTAATGATTTTCCTGAAGCCATCAAGCTATGTTCACAGGTGCTTAATGTTGAATTTTGCAATGTGAAAGCTTTGTATAGACGAGCACAAGCATATATAGAAACTGGAGATTACCTTTTAGCAGATGTAGACATCAAGAAAGCTCTTGTGATGGAACCACAAAACAGGGAGGTGAAAGTAATTCAGATGAAATTGAAGCAACTTCAAGCTGACAGTGACAAAAAAGATGCTAAGCTATATGAAAACATGTTTGCACCTAAGACAAAGGGCTCGTCTATGGCTTTAAAGAGATTGAAGATTGAGAAAGATGAGACGGAGAATGAAGAGGTTGCAAGAATGGAAACTGACAAAGTTGCTGATAGCGCTGTGATTTAA 1653 0.4465 MVVLLSESENEHDEEPGEVVDSAPPQKVDEERQFTSFKKKLLKPGHGWETPNFDDLVTVRCVGTLLDGATAFDSARERDQARTFTLGKGDIAAGLDRAIITMKKGEVALFTLPRDGGDVLQNSDGDSVVQFEVELVSWITVVDVCRNGGVLKKIMEKGTGNERPGDLDEVLVKYRVVLDDDTVVAETPVGGVEFHVKDGHLFPILQKVIMTMTRGEKAELIVQPQYAFGEKGREAGSGLCSIPLKSVLHVSIELVSFKPVIDVTGDSKVIKKILQEGEGAFTANENANVTEQVITGLDRAVATMKKGERAIISIHPDYAFGNVEVRGDLAIVPPGSNVVYDVELMDFIREKAPWELNSNEKIGVAGRMKEEGNVLFKGGNYLQARKKYRKAADFVYEDGSEVVFEQKQAMTLRVSCWLNGAACSLKLNDFPEAIKLCSQVLNVEFCNVKALYRRAQAYIETGDYLLADVDIKKALVMEPQNREVKVIQMKLKQLQADSDKKDAKLYENMFAPKTKGSSMALKRLKIEKDETENEEVARMETDKVADSAVI 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0399 550 SUPERFAMILY FKBP-like 28 140 - -
Aed6g0399 550 SUPERFAMILY TPR-like 361 510 IPR011990 GO:0005515
Aed6g0399 550 MobiDBLite consensus disorder prediction 531 550 - -
Aed6g0399 550 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 291 344 IPR001179 GO:0003755
Aed6g0399 550 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 163 255 IPR001179 GO:0003755
Aed6g0399 550 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 49 135 IPR001179 GO:0003755
Aed6g0399 550 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 291 348 - -
Aed6g0399 550 ProSiteProfiles TPR repeat profile. 448 481 IPR019734 GO:0005515
Aed6g0399 550 SUPERFAMILY FKBP-like 263 362 - -
Aed6g0399 550 Gene3D - 30 141 IPR046357 GO:0003755
Aed6g0399 550 PANTHER PEPTIDYLPROLYL ISOMERASE 348 532 - -
Aed6g0399 550 Gene3D - 142 258 IPR046357 GO:0003755
Aed6g0399 550 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 348 532 - -
Aed6g0399 550 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 54 139 IPR001179 GO:0003755
Aed6g0399 550 Gene3D - 288 353 IPR046357 GO:0003755
Aed6g0399 550 SUPERFAMILY FKBP-like 144 258 - -
Aed6g0399 550 MobiDBLite consensus disorder prediction 1 27 - -
Aed6g0399 550 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 167 258 IPR001179 GO:0003755
Aed6g0399 550 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 6 273 - -
Aed6g0399 550 PANTHER PEPTIDYLPROLYL ISOMERASE 291 348 - -
Aed6g0399 550 PANTHER PEPTIDYLPROLYL ISOMERASE 6 273 - -
Aed6g0399 550 Gene3D Tetratricopeptide repeat domain 354 508 IPR011990 GO:0005515
Aed6g0399 550 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 281 348 IPR001179 GO:0003755
Aed6g0399 550 SMART tpr_5 414 447 IPR019734 GO:0005515
Aed6g0399 550 SMART tpr_5 448 481 IPR019734 GO:0005515
Aed6g0399 550 SMART tpr_5 365 398 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0399 Aed-Chr6 3441559 3447464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0399 27 511 Calmodulin-binding Proteins AT3G25230 48.369 5.20e-156 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0399 K09571 - gmx:100798382 887.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0399 6 3441559 3447464 Aed6g0399 6 3441559 3447464 ECH