Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1237 ATGGCAGGAAACTTTGGAAGAAGCAAGTTTTATCAGAGTGGTGGCAGTTGCACAGGCAAGAAGGGAAGGAACAACTACAAAGCTTTCCAACGTCATCAACAACAACAAGAAGAAGAACAATCTTCTCATACAGGTTTAGACACGGAGCTCTTAAACCCGCTCCAGCCGCCGCTGAAGAAACGGTCTTGCCTCCCGCCTCTTCCACCGCCGCCGCTTACTTCATCCGAATATGCAAGAAAAATGGGAGAATCACATAACCATCAACAAGCAGCAGCAACAACGCCGTCGAGAGCGGCGATGAGAGGCGGCGGCGGAGGGGAAATCGTGGAGGTGCAAGGCGGCCACATTGTCCGCTCCACGGGACGGAAGGACCGCCACAGCAAGGTCTGCACCGCGAAAGGTCCCCGGGACCGCCGTGTACGCCTGGCGGCGCACACGGCGATCCAATTCTACGACGTCCAGGACCGCCTCGGCTACGACCGCCCCAGCAAGGCGGTCGACTGGCTCATCAAGAAAGCCAAGGCGGCCATCGACGAACTCGCGGAACTCCCGCCGTGGAACCCCACTGCCACGTCATTGCAACCGCAGCAGCAGCAACAACCGCAGCAGCAGGAAATCGTCGTCCACCACCGCGAAGACAGGTCATCTGTTCTGGCGGCGATGGACGACGAGGACTCGATTTTCAATAACCGCGTGGCTTTCGCCGCCGCAGCGGCTATCAGAGTTCCGGAACAATTCTCTCACCACCAGTTAGGAGAGAATCAAAATGCTAACAACAGCATCAGCAAGTACAATAGCGGTTCTGGTTTTCTGCCAGCGTCTTTGGACACTGACAACATTGCGGAGACAATCAAGACTTTCTTTCCAGTGGAGGCCACTACGACGTCGTTTCAGAGTTACCCGCCGGCACCGCCGGATTTGGGGCAGCAAGATCTGCGGCTCTCGCTGCAGTCCTTTCAGGACCCTATTATGCTTCACCACCACCACCAGCATCAGAGCCACCATCACCCGGTGCTCTTTGCCGGAACTGCCGCCGCAGCGCTCGGCTTCAACGGCGATTCCGGCTGGCCTGAGCACCAGCACCAGAACCACCATTCCGAGGAGCAGCGATTGCTCTATGCTGGTTCTGGTGTTGGTGGCATCAGTGGCCATGGCGGCGGGTTTTTGTTCAACACACCCGCCGTGCCGGTACCCGTGCAGGCGTCGGCTTTTGGCCAGTTTTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACAACCCTTCAATTCGTGCTTGGATAGACCCTTCGGTTGATCACCACCACCACCATCACTACCTATCACAGCTGATCCACCAGGGTTCCGTTGCTGGAGGCGGCGGCGGATTCTCCAGCTTCCACATTCCAGCACGAATTCAGGGTGATGAGGAACATGACGGCATATCCGACAAGCCGTCCTCTGCTTCCTCTGATTCTCGCCATTGA 1461 0.5695 MAGNFGRSKFYQSGGSCTGKKGRNNYKAFQRHQQQQEEEQSSHTGLDTELLNPLQPPLKKRSCLPPLPPPPLTSSEYARKMGESHNHQQAAATTPSRAAMRGGGGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPPWNPTATSLQPQQQQQPQQQEIVVHHREDRSSVLAAMDDEDSIFNNRVAFAAAAAIRVPEQFSHHQLGENQNANNSISKYNSGSGFLPASLDTDNIAETIKTFFPVEATTTSFQSYPPAPPDLGQQDLRLSLQSFQDPIMLHHHHQHQSHHHPVLFAGTAAAALGFNGDSGWPEHQHQNHHSEEQRLLYAGSGVGGISGHGGGFLFNTPAVPVPVQASAFGQFFSQRGPLQSSNNPSIRAWIDPSVDHHHHHHYLSQLIHQGSVAGGGGGFSSFHIPARIQGDEEHDGISDKPSSASSDSRH 486
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1237 486 MobiDBLite consensus disorder prediction 467 486 - -
Aed5g1237 486 PANTHER TRANSCRIPTION FACTOR TCP4 81 486 - -
Aed5g1237 486 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 81 486 IPR005333 GO:0003700
Aed5g1237 486 MobiDBLite consensus disorder prediction 59 73 - -
Aed5g1237 486 MobiDBLite consensus disorder prediction 1 101 - -
Aed5g1237 486 ProSiteProfiles TCP domain profile. 122 180 IPR017887 -
Aed5g1237 486 Pfam TCP family transcription factor 121 230 IPR017887 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Aed5g1237 Aed-Chr5 11238065 11239736 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1237 103 486 TCP Transcription Factor Family AT3G15030 47.418 2.17e-86 270
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Aed5g1237 TCP 1e-31 No_clan
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0549 1 7031966 7034251 Aed5g1237 5 11238065 11239736 ECH
Aed1g0774 1 8698547 8699569 Aed5g1237 5 11238065 11239736 ECH
Aed5g1237 5 11238065 11239736 Aed5g1237 5 11238065 11239736 ECH
Aed5g1237 5 11238065 11239736 Aed1g0774 1 8698547 8699569 PCT