Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1617 ATGGGGAGGGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGGCCTTGGTCGGCAGAAGAAGACGCCACACTCAAATCCTACATCGAACAGCACGGAACCGGAGGCAACTGGATCGCTTTGCCACAAAAGATCGGTCTTAAACGATGTGGCAAGAGTTGCCGTCTTAGGTGGCTAAACTACCTCCGCCCTAACATCAAGCACGGTGGTTTCTCCGAAGAAGAAGACAACATCATTTGCAGCCTCTACGTTAGCATTGGAAGCAGGTGGTCGGTCATTGCAGCACAATTGCCAGGAAGAACTGATAATGACATAAAGAACTACTGGAACACGAGGCTGAAGAAGAAGCTTCTAGGGAAGCACCGTAAGGAACTGCAGGCACGTAACAAAGGAAACGGTTACGGTGTCGTTAAGAAAGAGACCAATTCCTCACTACTCTTGCTTCAGGAAAACACTAGTACTTCTCAACAACAGCATCCATGTTGGCCACCGAATATTCCTCATCATGTGCTCCCGCTTTCACCGTACACAAACCAAAGTCCAAGTTTCAACGACCAAGACTCTATTAGAAAGCTTCTAATCAAGCTCGGAGGGAGATTCTCCAATGATTATCAACCCATTCTTGATGGGTTGAATCTTCCTCAGTTCCCACTAATTCAAGAGGAGCAAGTCCATGTTGGTTCTTCTGGGTGCATGAACCAAGTACAGTTTGGTGGTCATGATCAGTACTGTGGTGAGTTGGTGCATGGGCAAGGGAGTTTCACAGCATCAGAAATTGGGGAAATGGTTTCTAGTAACGATGATAATTCTCAAATGTTATTAGGGGGGTCGGAGTTTTTCTATGGGGAGGAAATGATTAACGATAACATCATAATGGGTGCTTCTGCTTCTTCTTCAAGTTGTGGACGACACAGTACTAATTGGGGTGAAACCACTTCTCTGATGTATCCTTCGCCTCTTGAATGTGCTAAGTTTGAAGAGTTGAGCTACCCGGGGGCGCAATAG 1005 0.4637 MGRAPCCDKANVKKGPWSAEEDATLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKELQARNKGNGYGVVKKETNSSLLLLQENTSTSQQQHPCWPPNIPHHVLPLSPYTNQSPSFNDQDSIRKLLIKLGGRFSNDYQPILDGLNLPQFPLIQEEQVHVGSSGCMNQVQFGGHDQYCGELVHGQGSFTASEIGEMVSSNDDNSQMLLGGSEFFYGEEMINDNIIMGASASSSSCGRHSTNWGETTSLMYPSPLECAKFEELSYPGAQ 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1617 334 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 1 217 - -
Aed4g1617 334 PANTHER OS09G0431300 PROTEIN 1 217 - -
Aed4g1617 334 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Aed4g1617 334 CDD SANT 71 113 IPR001005 -
Aed4g1617 334 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Aed4g1617 334 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Aed4g1617 334 CDD SANT 16 62 IPR001005 -
Aed4g1617 334 Gene3D - 7 68 - -
Aed4g1617 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Aed4g1617 334 SMART sant 67 115 IPR001005 -
Aed4g1617 334 SMART sant 13 64 IPR001005 -
Aed4g1617 334 Gene3D - 70 141 - -
Aed4g1617 334 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Aed4g1617 334 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Aed4g1617 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1617 Aed-Chr4 20906480 20907703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1617 1 316 MYB Transcription Factor Family AT3G49690 45.697 3.78e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed4g1617 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1617 K09422 - gmx:778079 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1617 4 20906480 20907703 Aed4g1617 4 20906480 20907703 ECH
Aed6g0427 6 3740446 3742124 Aed4g1617 4 20906480 20907703 PCT