Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1612 ATGGTGGACCCCTACGTGCTCGGATGGATCATATGCGCCGTGCTCAGCCTCATCGCGCTTCGTAGTTTCGCTTTCGAGCGGAAGAACCGTTGCGCTTCGTCGGAGAACGTTACCACCGCTGCCGGAGAATGCAGATCCTCGACCCGCGACGACGACGTTGACGTCATTATTGTCGGAGCCGGTGTCGCCGGCTCCGCTCTCGCTTACACTCTCGGCAAGATGGTGGTGCTGCATCACGTCTTTGCTTCTAATCTAAAGCTGTTGGTTGTTTCCTTGAATAAACAGTTTGATTTAGAGGATGGACGTCGTGTACTTGTCATTGAAAGAGATTTGAGTGAACCAGACCGAATTGTTGGAGAGTTGCTACAACCTGGAGGCTATCTCAAATTAATTGAGCTGGGACTTGAAGATTGTGTGGAGAAAATTGATGCTCAGCCGGTGTTTGGTTACGCTCTTTTCAAGGACGGGAAACACACACGACTCTCTTATCCATTGGAAAAGTTTCACTCAGATGTTACTGGCAGAAGCTTTCACAATGGGCGTTTTATTCAGAGGATGAGAGAGAAGGCTGCCTCCCTTCCCAATGTACGACTGGAGCAAGGATCAGTTACTTCCCTACTTGAAGATAAGAGGGTTATTAAAGGCGTGCACTACAAAACGAAGGACAGTCAAGAATTATCAGCTTGTGCACCCCTTACCATTGTTTGTGATGGCTGTTTCTCAAACTTGCGCCGTTCTCTTTGTAATCCAAAGGTAGATGTTCCCTCTCATTTCGTTGGCTTAATTTTGGAGAATTGTGAACTTCCTTGTGTAAATCATGGCCATGTCATACTGGGAGATCCTTCACCAGTTCTGTTCTATCGTATAAGTAGTTCAGAAATCCGCTGTCTGGTTGATGTTCCTGGTCAGAAGCTTCCATCTATTTCCAATGGTGAAATGGCAAATTATTTGAAGACAGTGGTAGCCCCACAGCCTGTGGCATCCACTATAAATACGTTGGCAGGAGCCCTTTACAAGGTTTTTTGCGCATCACCTGATCCAGCAAGGAAGGAAATGCGCCAAGCTTGCTTCGATTATCTTAGTCTTGGAGGTTTATTCTCGGAAGGGCCAGTCTCTTTGCTTTCAGGATTAAACCCTCGACCCTTGAGCCTGGTCCTCCATTTCTTTGCTGTTGCAATATATGGTGTTGGCCGTTTACTCATACCATTTCCTTCACCTAAACGGATATGGATGGGAGTCCGATTAATTTCTAGTGCATCTGGAATCATCTTCCCAATAATTAAGGCAGAAGGAGTCCGTCAGATGTTCTTCCCTGCAACTGTTCCAGCTTACTATAGAAATCCCCCGGCTGCATAA 1356 0.4661 MVDPYVLGWIICAVLSLIALRSFAFERKNRCASSENVTTAAGECRSSTRDDDVDVIIVGAGVAGSALAYTLGKMVVLHHVFASNLKLLVVSLNKQFDLEDGRRVLVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEKIDAQPVFGYALFKDGKHTRLSYPLEKFHSDVTGRSFHNGRFIQRMREKAASLPNVRLEQGSVTSLLEDKRVIKGVHYKTKDSQELSACAPLTIVCDGCFSNLRRSLCNPKVDVPSHFVGLILENCELPCVNHGHVILGDPSPVLFYRISSSEIRCLVDVPGQKLPSISNGEMANYLKTVVAPQPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSPKRIWMGVRLISSASGIIFPIIKAEGVRQMFFPATVPAYYRNPPAA 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1612 451 SUPERFAMILY FAD/NAD(P)-binding domain 52 250 IPR036188 -
Aed4g1612 451 Gene3D - 41 333 IPR036188 -
Aed4g1612 451 Pfam Squalene epoxidase 325 410 IPR013698 GO:0004506|GO:0016021|GO:0050660
Aed4g1612 451 Pfam Squalene epoxidase 230 324 IPR013698 GO:0004506|GO:0016021|GO:0050660
Aed4g1612 451 PANTHER SQUALENE MONOOXYGENASE 1 74 IPR040125 GO:0004506|GO:0016126
Aed4g1612 451 PANTHER SQUALENE MONOOXYGENASE 99 324 IPR040125 GO:0004506|GO:0016126
Aed4g1612 451 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 74 - -
Aed4g1612 451 PANTHER SQUALENE MONOOXYGENASE-RELATED 99 324 - -
Aed4g1612 451 PANTHER SQUALENE MONOOXYGENASE-RELATED 324 450 - -
Aed4g1612 451 PANTHER SQUALENE MONOOXYGENASE 324 450 IPR040125 GO:0004506|GO:0016126
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1612 Aed-Chr4 20859059 20865164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1612 324 449 Miscellaneous Gene Families AT2G22830 79.365 1.42e-52 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1612 K00511 - cit:102622002 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1612 4 20859059 20865164 Aed4g1612 4 20859059 20865164 ECH
Aed6g0422 6 3688157 3692594 Aed4g1612 4 20859059 20865164 PCT