Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00928 ATGGAGGGAAAACACTCTGTTCCAAGTATGACCAAGCCTACTAATATCATACAAAATCATGACTTCTCTGAAGGGCTAAGCTTTTGGCATCCGAATGGCTGTGACGGCTATGTTGCTTCAACTGAACCAGGTCCTCAAGGAGGAGTGACAATGACATTAGGTGCTAAATATGCTGTTATCACAAACAGAAAGGAATGGTGGCAAGGTCTTGAGCAAGATATCACTGGAAAAATCTCTGTCGCTTCCACTTATGCTGTTTCGGCCAATGTTGGAGTAGCTGCACTTTCTGAGGGATCTGCTGATGTTCTAGCTACCCTGAAACTAGAGTATCATGGTTCTGATGCAAGCTACCTGTTCCTTGGGAGAACTTCTTGTACAAATGGTAGCTGGGAAAATCTGAAAGGGACATTTTCATTGTCAACTATGCCTGATCGAGTTACATTTTATTTGGAAGGACCTGCTCCTGGAGTTGACCTTCTTATACAATCAGTAGAGATTACCTGCTCTAGTTCAAGTGATATTGAGGATCATGCAAAAACAACAGGAACTTTGTCAACTGAAGATGATAACATCATAATAAACCCACAATTTGATGATGGCCAGAATAACTGGTCTGGAAGAGGCTGCAAGATCGCAATACACGACTCACTGGGAAATGGAAAAGTCCTTCCCAAGGTTGGAAAATTCTTTGCAGCTGCAACAGAACGCACCCAAAGATGGGTTCAGAATCCGGATTCTCGAGAGCAGTATATAGGAATTGCCAATGTGCAGGCAACAAATCAAGATTGGGTTCAATTGCAGGGAAAGTTCCTCATAAATAATTCCCCATCAAAAGTGGTTGTTTATTTAGAAGGTCCCCCAGCAGGCATTGACATTCTTGTCAATACTATTGTTATAAAACATGCTCCCAAGACACCTCCATCAACGCCACCAGATTTTGAGGATGCTCCTTTTGGGATTAATATAATTGAGAATAGTAATCTGGCTAATGGCACCAATGGATGGTTTCCCCTTGGTAATTGTACTCTGAGTGTTGGAACCGGTTCGCCACGTGTGCTTCCACCAATGGCAAGAGACTCTCTTGGACCTCACGAATCATTGAGCGGCCGCTATGTCCTTGTAACGAACCGCACCCAAACATGGATGGGGCCTGCGCAGATGATCACTGAGAAATTGAAGCTGTTCTTAACATACCAAGTGTCTGCTTGGGTGAGGATTGGTTCAACAGGATCAGTTGGTCCTCAGAATGTGAATGTTGCCCTTAGTGTTGACGATCAGTGGGTGAATGGCGGACAGGTTGAGGTTGCTGATGACAGATGGCATGAAATTGGTGGATCATTTAGAATTGAGAAGCAACCATCAAAGGTTATGGTTTATATTCAAGGTCCTGCTTCTGGTGTTGATTTGATGATTGCTGGACTTCAAATCTTCCCTGTTGATAGACAAGCAAGGTTTAGATATTTAAGGAGGCAGACAGACAAGGTTCGAAAGCGCGATGTAATCTTGAAATTCTCTGGGCTGGAGGACATAAGTGGTCTAGGAACTTTGGTTAAAGTGAGGCAAATACAGAACGATTTTCCAATTGGAACATGCATCAACAGAACAAACATTGACAATGAAGACTTTGTTGACTTCTTTGTGAAGCATTTTAACTGGGCTGTGTTTGGGAATGAGTTGAAGTGGTATTGGACAGAACCACAACAGGGGAATATCAACTACAAAGATGCTGATGAAATGTTAGACTTATGCCTCAAGAACAAGATAGAAACCCGCAGCCACTGCATCTTCTGGGAAGTAGAAGGCACAGTTCAGCAGTGGATCAAATCACTGAACAAAGACGATTTGATGAAAGCGGTCCAAAATCGGTTAAGCAGCCTCTTGAATCGGTACAAGGGGAAGTTCAGGCACTATGATGTTAACAATGAAATGCTGCATGGTTCATTTTATCAAGACAGGCTTGGTAGAGACATAAGAGCAAACATGTTCAAGACAGCACACCAATTAGACCCATCTGCTACTCTCTTTGTGAATGATTATCACATTGAAGATGGAAACGACACAAGATCAACACCAGAGAAATACATTCAACAGATTCTTGATTTGCAACATCAAGGTGCACCAGTTGGTGGAATTGGAATTCAAGGACACATAGATAGTCCTGTGGGGCCTATTGTTTGTTCTGCACTTGATAAATTAGGGACTCTTGGTTTACCAATATGGTTCACTGAGCTTGATGTTTCTTCAAGAAATGAGTATGTTAGAGCTGATGATTTGGAAGTTATGATGAGGGAAGCCATGGCACACCCTTCAGTAGATGGCATAATGCTGTGGGGATTCTGGGAATTGTTTATGAGCAGGGAGAATTCACACTTGGTGAATGCAGAAGGTGATGTTAATGAAGCTGGAAAAAGGTTACTTTGTCTTAAACAAGAGTGGTTGTCTCATAGCCATGGCTGTGTTGATGATCAAGGACTATTCAGCTTCAGAGGCTTCAGTGGAACATACAATGTTGAAGTTGTAACCTTATCTAAGATTGTTTCAAAGACATTTGTTGTTGGTAAAGGTGACTCTCCTTTGGAGGTAGAGGTATCCTTTGACTAG 2601 0.4237 MEGKHSVPSMTKPTNIIQNHDFSEGLSFWHPNGCDGYVASTEPGPQGGVTMTLGAKYAVITNRKEWWQGLEQDITGKISVASTYAVSANVGVAALSEGSADVLATLKLEYHGSDASYLFLGRTSCTNGSWENLKGTFSLSTMPDRVTFYLEGPAPGVDLLIQSVEITCSSSSDIEDHAKTTGTLSTEDDNIIINPQFDDGQNNWSGRGCKIAIHDSLGNGKVLPKVGKFFAAATERTQRWVQNPDSREQYIGIANVQATNQDWVQLQGKFLINNSPSKVVVYLEGPPAGIDILVNTIVIKHAPKTPPSTPPDFEDAPFGINIIENSNLANGTNGWFPLGNCTLSVGTGSPRVLPPMARDSLGPHESLSGRYVLVTNRTQTWMGPAQMITEKLKLFLTYQVSAWVRIGSTGSVGPQNVNVALSVDDQWVNGGQVEVADDRWHEIGGSFRIEKQPSKVMVYIQGPASGVDLMIAGLQIFPVDRQARFRYLRRQTDKVRKRDVILKFSGLEDISGLGTLVKVRQIQNDFPIGTCINRTNIDNEDFVDFFVKHFNWAVFGNELKWYWTEPQQGNINYKDADEMLDLCLKNKIETRSHCIFWEVEGTVQQWIKSLNKDDLMKAVQNRLSSLLNRYKGKFRHYDVNNEMLHGSFYQDRLGRDIRANMFKTAHQLDPSATLFVNDYHIEDGNDTRSTPEKYIQQILDLQHQGAPVGGIGIQGHIDSPVGPIVCSALDKLGTLGLPIWFTELDVSSRNEYVRADDLEVMMREAMAHPSVDGIMLWGFWELFMSRENSHLVNAEGDVNEAGKRLLCLKQEWLSHSHGCVDDQGLFSFRGFSGTYNVEVVTLSKIVSKTFVVGKGDSPLEVEVSFD 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00928 866 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 240 863 - -
Adu08g00928 866 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 14 168 - -
Adu08g00928 866 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 178 240 - -
Adu08g00928 866 Pfam Carbohydrate binding domain 321 465 IPR003305 GO:0016798
Adu08g00928 866 Pfam Carbohydrate binding domain 15 155 IPR003305 GO:0016798
Adu08g00928 866 SMART glyco_10 559 809 IPR001000 GO:0004553|GO:0005975
Adu08g00928 866 SUPERFAMILY (Trans)glycosidases 517 816 IPR017853 -
Adu08g00928 866 PANTHER GLYCOSYL HYDROLASE 240 863 IPR044846 GO:0004553|GO:0005975
Adu08g00928 866 PANTHER GLYCOSYL HYDROLASE 178 240 IPR044846 GO:0004553|GO:0005975
Adu08g00928 866 PANTHER GLYCOSYL HYDROLASE 14 168 IPR044846 GO:0004553|GO:0005975
Adu08g00928 866 SUPERFAMILY Galactose-binding domain-like 188 304 IPR008979 -
Adu08g00928 866 Gene3D - 9 168 - -
Adu08g00928 866 Gene3D - 236 301 - -
Adu08g00928 866 Gene3D - 318 477 - -
Adu08g00928 866 Coils Coil 791 811 - -
Adu08g00928 866 Gene3D Glycosidases 513 816 - -
Adu08g00928 866 SUPERFAMILY Galactose-binding domain-like 13 169 IPR008979 -
Adu08g00928 866 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 513 808 IPR001000 GO:0004553|GO:0005975
Adu08g00928 866 SUPERFAMILY Galactose-binding domain-like 319 480 IPR008979 -
Adu08g00928 866 ProSitePatterns Glycosyl hydrolases family 10 (GH10) active site. 736 746 IPR031158 -
Adu08g00928 866 Pfam Glycosyl hydrolase family 10 522 779 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00928 Adu-Chr8 16890286 16894304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00928 14 865 Glycoside Hydrolase AT1G58370 63.687 0.0 1189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00928 - - gmx:100818319 1364.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00928 08 16890286 16894304 Adu08g00928 08 16890286 16894304 ECH
Adu06g03058 06 108570595 108575331 Adu08g00928 08 16890286 16894304 PCT