Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g03061 ATGGGGAGAGCTCCTTGCTGTGACAAAGCAAATGTGAAGAAAGGGCCATGGTCTCCTGAAGAAGATGCTAAGCTCAAATCATACATACAACAACATGGCACTGGTGGCAATTGGATTGCTTTGCCTCCAAAAATTGGATTGAAGCGTTGTGGGAAGAGTTGCCGTCTAAGGTGGTTGAACTATCTTCGCCCTAATCTCAAGCATGGTGATTTCTCTGAAGAAGAAGACAACATTATTTGTAGCCTCTATGTTAGTATTGGAAGCAGGTGGTCAGTTATTGCTGCTCAATTGCCAGGAAGAACTGATAATGACATAAAGAACTATTGGAACACAAGGCTCAAAAAGAAGCTTCTTGGGAATAACAAGAACCGCCGCAACAAAGAACAGCAACACTTACAAGCATGTAGCAATAATGGAATCAACAAGCAACAAGAAACATCATCAATTAATGGAGGGAGTGTTATTATTGGTGATGATTCCTTCTCTTCCTTATTGGTTCATGAAAATAGTAGTACTACTCATCAACAACAACAACAACAATGTTATTGGCCACACTTCATGCCAGTGTTGCCAATACCAAATTTGCCATATAGCACAACAAATAATAACCAACAATTCTACTTAGGATCTTCTTTCAATGACCAAGATTCCATCAAGAAACTACTTATCAAGCTTGGAGGGAGATTCCATAATGATGTTGATTATGATAATTACCATCCTACCCTTGGTGATGGATTATTGAATCATCTTCATCAATCACAAGGTACTACTACTACTACTTATTATTCTAATAATTCAACACAACAACAAGTAGTTTATCATCAAGAACAAATACAATTTGATGATGGTAATAATGGACTTCATCATGATGAAATGGTGCAAAGAAAAGGAAACCTCAACAATGAAATTGAAGAAGAAATGGTGGGTAATACTAATTTTATTCCACAAAGATTATTAAATAATGGGTTGGAGTTCTTACATGGAGACATGGTTTTCAGTGAGGATAAGATTATAATAGGCTCTAGTACTACTAGGCCTAATTGGGGTGAGAATAGTAGTGGCAATTCAGTAATTGACCACCCTCTTATTTCTTCTTCAAATTACCAAGAAGATGAAGGTGTAAGGGCATCAGAAGAATGTGGTTTGCAAGAGTATAGCACTATAGCCACCATGAGGAGCAATAGTAGCAATAGCATGCTTCATGTACAATAA 1212 0.3729 MGRAPCCDKANVKKGPWSPEEDAKLKSYIQQHGTGGNWIALPPKIGLKRCGKSCRLRWLNYLRPNLKHGDFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGNNKNRRNKEQQHLQACSNNGINKQQETSSINGGSVIIGDDSFSSLLVHENSSTTHQQQQQQCYWPHFMPVLPIPNLPYSTTNNNQQFYLGSSFNDQDSIKKLLIKLGGRFHNDVDYDNYHPTLGDGLLNHLHQSQGTTTTTYYSNNSTQQQVVYHQEQIQFDDGNNGLHHDEMVQRKGNLNNEIEEEMVGNTNFIPQRLLNNGLEFLHGDMVFSEDKIIIGSSTTRPNWGENSSGNSVIDHPLISSSNYQEDEGVRASEECGLQEYSTIATMRSNSSNSMLHVQ 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g03061 403 CDD SANT 71 113 IPR001005 -
Adu06g03061 403 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Adu06g03061 403 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Adu06g03061 403 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Adu06g03061 403 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Adu06g03061 403 Gene3D - 7 68 - -
Adu06g03061 403 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Adu06g03061 403 CDD SANT 16 62 IPR001005 -
Adu06g03061 403 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Adu06g03061 403 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Adu06g03061 403 SMART sant 67 115 IPR001005 -
Adu06g03061 403 SMART sant 13 64 IPR001005 -
Adu06g03061 403 PANTHER OS09G0431300 PROTEIN 1 276 - -
Adu06g03061 403 PANTHER OS09G0431300 PROTEIN 1 276 - -
Adu06g03061 403 Gene3D - 69 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g03061 Adu-Chr6 108693183 108694965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g03061 1 224 MYB Transcription Factor Family AT3G49690 57.589 1.97e-80 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu06g03061 Myb_DNA-binding 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g03061 K09422 - gmx:100800290 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g03061 06 108693183 108694965 Adu08g00932 08 17019072 17020557 PCT