Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g03059 ATGGAGGAATACCCTAATAATAATAATAATAACTTGAGGCAAGAAAAGAGAGGTGCAAATGCAATAAGGCCAAGTTTCTTGTACTCATCAACTACTAATACTGCTTCTCTTCATAATCATCATCATCATCACCACCAAGTTCCAATCAACACCTTTAATCTTCAATCTTCAGATCATCATCATCAACAATGTTTTGAATCTGATGATAATCATCAAGTTCTTGTTGTGAAGACTGAAGCAATTAGCACCACCCCACATCATCACTATCCTTTGTTGAGGGGAAACAATAATAATATGCATCATCCCCACCATAGCCAGCAACACCATCATCATCATCAACAAGGACGGAATTACAACCAAACCTCCAATAATGGTGGTGGTGAAGTTGATGCCATCAAAGCCAAAATCATTGCTCATCCTCACTACTCTAATCTCTTAGAAGCTTACATGGATTGCCAAAAGGTCGGAGCTCCGCCGGAAGTGGTGGCGCGACTGGTGGCGGCGAGGCAGGAATTTGAGGCACGGCAACGATCTTCAGTTAGCTCAAGGGAAAGTTCCAATAAGGACCCAGAACTTGACCAATTCATGGAAGCTTACTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCTATAGAAGAGGCTATGGATTTCATGAGAAGAATAGAAACACAGCTAAATATGCTTTGCAATGGACCCGTTAGGATCTTCCAAGGTATAGTGGTAGAGGGAGATACAGAAGTAGCAGAGATTGATCCAAGAGCTGAAGACCGTGAACTGAAGAACCATTTGCTTAGAAAATATAGTGGTTACTTGAGTAGCCTTAAGCAAGAACTCTCCAAGAAGAAGAAGAAAGGAAAACTCCCTAAGGATGCTAGGCAGAAGCTCCTTAACTGGTGGGAACTTCATTACAAATGGCCTTATCCTTCGGAATCAGAGAAGGTGGCACTAGCAGAATCAACAGGTTTGGACCAAAAGCAAATTAACAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAACCCTCTGAAGACATGCAGTTCATGGTGATGGATGGCCTTCATGCTCATCAGAAACAAACCCTCTATATGGATCCTCATTACTTGCCTGATCCTCACTACCGTCTAGCTCCATGA 1143 0.4208 MEEYPNNNNNNLRQEKRGANAIRPSFLYSSTTNTASLHNHHHHHHQVPINTFNLQSSDHHHQQCFESDDNHQVLVVKTEAISTTPHHHYPLLRGNNNNMHHPHHSQQHHHHHQQGRNYNQTSNNGGGEVDAIKAKIIAHPHYSNLLEAYMDCQKVGAPPEVVARLVAARQEFEARQRSSVSSRESSNKDPELDQFMEAYYDMLVKYREELTRPIEEAMDFMRRIETQLNMLCNGPVRIFQGIVVEGDTEVAEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHAHQKQTLYMDPHYLPDPHYRLAP 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g03059 380 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 372 - -
Adu06g03059 380 SMART ELK_2 261 282 IPR005539 GO:0003677
Adu06g03059 380 MobiDBLite consensus disorder prediction 1 20 - -
Adu06g03059 380 ProSiteProfiles ELK domain profile. 261 281 IPR005539 GO:0003677
Adu06g03059 380 Pfam KNOX2 domain 187 232 IPR005541 GO:0003677|GO:0005634
Adu06g03059 380 MobiDBLite consensus disorder prediction 1 16 - -
Adu06g03059 380 ProSiteProfiles 'Homeobox' domain profile. 281 344 IPR001356 GO:0003677
Adu06g03059 380 Pfam ELK domain 261 282 IPR005539 GO:0003677
Adu06g03059 380 Pfam Homeobox KN domain 301 340 IPR008422 GO:0003677|GO:0006355
Adu06g03059 380 SMART KNOX2_2 182 233 IPR005541 GO:0003677|GO:0005634
Adu06g03059 380 Pfam KNOX1 domain 131 173 IPR005540 GO:0003677|GO:0005634
Adu06g03059 380 Gene3D - 286 348 - -
Adu06g03059 380 CDD homeodomain 293 345 IPR001356 GO:0003677
Adu06g03059 380 SMART KNOX1_2 130 174 IPR005540 GO:0003677|GO:0005634
Adu06g03059 380 MobiDBLite consensus disorder prediction 92 127 - -
Adu06g03059 380 ProSitePatterns 'Homeobox' domain signature. 319 342 IPR017970 GO:0000981|GO:0006355
Adu06g03059 380 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 372 - -
Adu06g03059 380 SUPERFAMILY Homeodomain-like 282 355 IPR009057 -
Adu06g03059 380 SMART HOX_1 283 348 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g03059 Adu-Chr6 108643882 108652845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g03059 62 380 Homeobox Transcription Factor Family AT4G08150 63.127 3.43e-135 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Adu06g03059 KNOX2 5.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g03059 - - gmx:100800822 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g03059 06 108643882 108652845 Adu06g03059 06 108643882 108652845 ECH