Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g03057 ATGTTGAACAACATAAATAACAGTAGCCATTCATGGCTGTGGTTTGTGGCGAGGCACTACTCTAGGATTCGTCCTCCAAAGCCTGTCCCTGTTGAATCAGTGATCAGGGTGTCCAACAACGTTGCTCGTTTGGGTTCTCGGAAAGAAGGCCCGAAGCCGAGGCAACTACTGTCTTTGCCACCTTTTCCTGGTCACCCTTTGCCCGGAAGGAACTCAAATGAAAGTTTTCAAGATGGGCAGCAACATGATGGTTATGTCACTGCTGTTAATTGGATCAAGTATTACTTCAAAGGCATATTGGGTTCTGTCATTGAGTCTCATTTCAGGGAGGGTCTTGTCCAAATGGAGGACCCAATTTCTGACAATAATTTATCTCAGAATGAAGAGCCAAGGAGACCCTTGCGAAAGATTAGACCTAATGAAGTAATGAAGCAAGGGGCAAGAATTCATATCCCTGTGTCAATTGCCGAGGCTAGGATTTCCAAAAGATATGATGCTATACCAAGTGGAACACTATATCCCAATGCTGATGAAATTAAGTATTTGCAAAGGCTTGTCATTTATAAGGCATGTCTTGCATCCAATGACTCGGCTATCATGGTGCTAAATAAACCCCCAAAATTGCCGGTTAAGGGGAATCTGCCGGTTCATAACAGCATGGATGCATTAGCAGCTGCAGCACTATCCTATGATTATGATGAGGGTCCTAAACTGGTCCACCGTCTTGACAGGGAGACCAGTGGCATCATTTTATTTGGCAGAAAAGAACAAAGTGTGTCTCACCTGCAGTGGCTGTTCAGTAACATAAACAATGCAAAATCTTCTAGTAAGGTTTGGAATGATGCATGTGAATCTACATATCAGAGGTATTGGGCACTAGTCATAGGGACTCCCAAGGAGAAGGAAGGTGTAATTTGTGCTCCCCTTAGAAAGGTGCTCTTGGATGATGGGAAGACAGAGAGGGTCGTATTAGCTCACCATTCAAGTATGGAACCTCGCCAAGAGGCTGTAACTGAATATCGAGTCCTTGGTCCAAAGATAAATGGATGCTCCTGGGTTGAGCTGCGACCACTTACGTACCGGAAGCATCAGTTGCGTGTCCATTGTGCTGAAGCACTTGGCACTCCGATAGTGGGCGATTACAAGTATGGTTGGTTTGTACACAGTCGTTGGAAACAAATGCCCCGAGTTGATGTCGAGCCAACGACTGGAAAACCATACAAGATGAGGAGACCAGAAGGCCTAGATGTTCAGAAGGGAAGTGTATTATCCAAGGTCCCCCTATTGCATCTTCACTGCAGAGAACTTGTACTTCCCAACATTGCTAAGTTTCTTCATGTTTTCAATAAGAGTTCAGGAGAACTGCCCCGTTCACTTAGCGCAGAACCCGATGTTCTTCGCTTTGTGGCAACGATGCCGTCGCATATGAAAATTAGTTGGAATCTTATGTCATCATATTTAGTCTGA 1467 0.4479 MLNNINNSSHSWLWFVARHYSRIRPPKPVPVESVIRVSNNVARLGSRKEGPKPRQLLSLPPFPGHPLPGRNSNESFQDGQQHDGYVTAVNWIKYYFKGILGSVIESHFREGLVQMEDPISDNNLSQNEEPRRPLRKIRPNEVMKQGARIHIPVSIAEARISKRYDAIPSGTLYPNADEIKYLQRLVIYKACLASNDSAIMVLNKPPKLPVKGNLPVHNSMDALAAAALSYDYDEGPKLVHRLDRETSGIILFGRKEQSVSHLQWLFSNINNAKSSSKVWNDACESTYQRYWALVIGTPKEKEGVICAPLRKVLLDDGKTERVVLAHHSSMEPRQEAVTEYRVLGPKINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPRVDVEPTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLHVFNKSSGELPRSLSAEPDVLRFVATMPSHMKISWNLMSSYLV 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g03057 488 Pfam RNA pseudouridylate synthase 199 370 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Adu06g03057 488 PANTHER RNA PSEUDOURIDINE SYNTHASE 3, MITOCHONDRIAL 11 485 - -
Adu06g03057 488 CDD PseudoU_synth_RluA_like 199 395 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Adu06g03057 488 SUPERFAMILY Pseudouridine synthase 191 441 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Adu06g03057 488 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 11 485 - -
Adu06g03057 488 MobiDBLite consensus disorder prediction 44 80 - -
Adu06g03057 488 ProSitePatterns Rlu family of pseudouridine synthase signature. 239 253 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Adu06g03057 488 Gene3D Pseudouridine synthase 188 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g03057 Adu-Chr6 108564535 108568172 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g03057 - - pvu:PHAVU_001G032500g 803.512