Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi4g0714 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0715 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal2g0983 . . . . . . . Mtr3g3834 . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto5g0951 . Tpr7g0733 . . . Tsu07g00738 . . . . . . . . . . . . .
Vvi4g0716 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0717 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0718 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0719 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0720 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0721 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal2g0985 . . . . . . . Mtr3g3833 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr7g0734 . . . Tsu07g00739 . . . . . . . . . . . . .
Vvi4g0722 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0723 . . . . Adu08g02397 . . . . . . . . . . . . . . . Arst8g03295 . Bach12g00579 . . . . . Car05g03048 . . Cca05g00630 . . . . . . . . Gma14g01248 . . . Gso14g1085 . . . . . . . . . . . . . . . Lapu9g01801 . Lasa5g04192 . . . . . . . . . . . Mal2g0753 . . . Mesa9g05223 . . . Mtr3g4017 . Phac9g00541 . Phco7g00859 . . . . . Pste2g02034 . . . . . Pumo10g00880 . Pvu9g1050 . Rops10g01508 . Seca4g00807 . Spst9g00892 . . . Sto5g0952 . Tpr7g0492 . Trre5g05362 . . . Vian4g01881 . Vifa2g04142 . Vimu10g02822 . Viun9g02928 . Vivi3g00019 . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Adu Adu08g02397 Chr08 39645878 39653342 -
Arst Arst8g03295 Chr8 44010981 44018403 -
Bach Bach12g00579 Chr12 3943700 3953072 +
Lapu Lapu9g01801 Chr9 32827075 32835222 -
Lasa Lasa5g04192 Chr5 639311776 639321338 +
Mesa Mesa9g05223 Chr9 86980712 86989055 +
Phac Phac9g00541 Chr9 3525549 3533422 +
Phco Phco7g00859 Chr7 6807126 6814143 +
Pste Pste2g02034 Chr2 20582341 20590954 +
Pumo Pumo10g00880 Chr10 11547663 11555538 +
Pvu Pvu9g1050 Chr9 15550849 15558791 +
Rops Rops10g01508 Chr10 28390471 28401521 +
Seca Seca4g00807 Chr4 13422468 13425701 -
Spst Spst9g00892 Chr9 7822502 7829383 +
Trre Trre5g05362 Chr5 54378898 54386207 +
Vian Vian4g01881 Chr4 35297057 35303408 -
Vifa Vifa2g04142 Chr2 1210213567 1210219892 +
Vimu Vimu10g02822 Chr10 39541989 39557041 -
Viun Viun9g02928 Chr9 37408808 37415517 -
Vivi Vivi3g00019 Chr3 244432 252086 +
Vvi Vvi4g0714 Chr4 7881184 7890145 -
Vvi Vvi4g0715 Chr4 7892040 7897638 +
Mal Mal2g0983 Chr2 11594501 11602662 +
Mtr Mtr3g3834 Chr3 52163442 52168857 -
Sto Sto5g0951 Chr5 6400630 6404187 +
Tpr Tpr7g0733 Chr7 6505364 6510352 +
Tsu Tsu07g00738 Chr07 6046921 6063860 +
Vvi Vvi4g0716 Chr4 7943541 7943906 +
Vvi Vvi4g0717 Chr4 7943966 7944244 +
Vvi Vvi4g0718 Chr4 7945764 7947033 +
Vvi Vvi4g0719 Chr4 7967114 7971714 -
Vvi Vvi4g0720 Chr4 8008341 8010586 -
Vvi Vvi4g0721 Chr4 8015500 8016024 +
Mal Mal2g0985 Chr2 11614204 11622010 +
Mtr Mtr3g3833 Chr3 52152017 52158967 -
Tpr Tpr7g0734 Chr7 6511570 6517666 +
Tsu Tsu07g00739 Chr07 6070055 6083133 +
Vvi Vvi4g0722 Chr4 8016649 8017008 +
Vvi Vvi4g0723 Chr4 8027034 8030099 +
Adu Adu08g02397 Chr08 39645878 39653342 -
Arst Arst8g03295 Chr8 44010981 44018403 -
Bach Bach12g00579 Chr12 3943700 3953072 +
Car Car05g03048 Chr05 75321987 75329188 +
Cca Cca05g00630 Chr05 14861784 14865887 +
Gma Gma14g01248 Chr14 20880620 20914807 +
Gso Gso14g1085 Chr14 19452763 19491612 +
Lapu Lapu9g01801 Chr9 32827075 32835222 -
Lasa Lasa5g04192 Chr5 639311776 639321338 +
Mal Mal2g0753 Chr2 8766355 8774954 -
Mesa Mesa9g05223 Chr9 86980712 86989055 +
Mtr Mtr3g4017 Chr3 53903617 53914256 +
Phac Phac9g00541 Chr9 3525549 3533422 +
Phco Phco7g00859 Chr7 6807126 6814143 +
Pste Pste2g02034 Chr2 20582341 20590954 +
Pumo Pumo10g00880 Chr10 11547663 11555538 +
Pvu Pvu9g1050 Chr9 15550849 15558791 +
Rops Rops10g01508 Chr10 28390471 28401521 +
Seca Seca4g00807 Chr4 13422468 13425701 -
Spst Spst9g00892 Chr9 7822502 7829383 +
Sto Sto5g0952 Chr5 6405613 6412009 +
Tpr Tpr7g0492 Chr7 4174599 4182172 -
Trre Trre5g05362 Chr5 54378898 54386207 +
Vian Vian4g01881 Chr4 35297057 35303408 -
Vifa Vifa2g04142 Chr2 1210213567 1210219892 +
Vimu Vimu10g02822 Chr10 39541989 39557041 -
Viun Viun9g02928 Chr9 37408808 37415517 -
Vivi Vivi3g00019 Chr3 244432 252086 +