Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00859 ATGCAACAGAGGCTGAAGTTGCAGCAACAACAAGCCCTCATGCAGCAAGCTTTGCTTCAGCAGCAGCAGCAGATGTACCACCCTGGCATGCTCGCCGCAGCTATGTCTCAGATGGAGCCTGTTCCAAGTGGAAATTTGCCTCCTGGTTTTGATACATCTGCATGCCGTAGTGTTTATGTAGGAAATATTCATGTAAATGTCACTGATAAACTTCTCGCAGAAGTTTTTCAGAGTGCTGGTCCTCTTGCTGGCTGCAAGCTCATAAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTATCATGATCGAGCATCTGCTGCCCTTGCAATAATGACATTGCACGGACGACAACTTTATGGTCAAGCACTTAAGGTGAATTGGGCATATGCCAATAGCAGTAGGGAGGACACATCAGGGCACTTCAATATATTTGTCGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCTTGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACCGGTCGGTCAAAAGGATATGGTTTTGTTTCTTTCCGCGATCATCAGGATGCCCAAAGTGCCATAAATGATATGACAGGTAAGTGGTTGGGAAATAGGCAAATACGATGCAACTGGGCAACTAAGGGTGCTGGTACCAGCTCCAGTGAAGAAAAGAGCAATGACAACCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGATGGAGGTCAAGATAATAATAATGAGGATGCTCCTGAAAACAATTCTTTATACACTACAGTTTATGTTGGCAACCTTCCTCACGATGTAACACAAGCTGAACTCCATTGCCAATTCCATGCACTGGGAGCTGGGGTAATTGAGGAGGTTCGAGTTCAAAGGGATAAGGGTTTTGGATTTGTCAGATACAACACTCACGAGGAAGCTGCGTTGGCCATTCAGGTGGCTAATGGAAGAATAATCCGTGGGAAGAGTATGAAGTGCTCATGGGGTAGTAAACCAACTCCTCCTGGAACAGCTTCGAATCCATTACCTCCTCCTGCTCAACCGTATCAAATACTTCCGACTGCAGGGATGAACCAAGGTTATTCTCCTGCTGAGTTGTTGGTTTATCAGCGCCAACTGGCCTTGAGTCAGGCTGCTGTATCTGGTCTTTCAGGTCAAGCTCTTCTGCAAATGACTGGACAACATGGCCTAGCTCCTGCTTCAATGGGCGTAAACTCTGGGGGATCTCAAGCCATGTATGATGGATATACCGGTAATTCATCAAGGCAGCAGCTTATGTACTATCGTTGA 1308 0.4541 MQQRLKLQQQQALMQQALLQQQQQMYHPGMLAAAMSQMEPVPSGNLPPGFDTSACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGTSSSEEKSNDNQNAVVLTNGSSDGGQDNNNEDAPENNSLYTTVYVGNLPHDVTQAELHCQFHALGAGVIEEVRVQRDKGFGFVRYNTHEEAALAIQVANGRIIRGKSMKCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSPAELLVYQRQLALSQAAVSGLSGQALLQMTGQHGLAPASMGVNSGGSQAMYDGYTGNSSRQQLMYYR 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00859 435 FunFam Oligouridylate-binding protein 1C 240 341 - -
Phco7g00859 435 Gene3D - 139 240 IPR012677 -
Phco7g00859 435 Gene3D - 1 138 IPR012677 -
Phco7g00859 435 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 44 340 - -
Phco7g00859 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 219 IPR000504 GO:0003723
Phco7g00859 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 337 IPR000504 GO:0003723
Phco7g00859 435 SUPERFAMILY RNA-binding domain, RBD 256 346 IPR035979 GO:0003676
Phco7g00859 435 FunFam Nucleolysin TIAR-like protein 1 139 - -
Phco7g00859 435 MobiDBLite consensus disorder prediction 219 259 - -
Phco7g00859 435 SUPERFAMILY RNA-binding domain, RBD 135 246 IPR035979 GO:0003676
Phco7g00859 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 130 IPR000504 GO:0003723
Phco7g00859 435 Gene3D - 241 341 IPR012677 -
Phco7g00859 435 SMART rrm1_1 264 333 IPR000504 GO:0003723
Phco7g00859 435 SMART rrm1_1 142 215 IPR000504 GO:0003723
Phco7g00859 435 SMART rrm1_1 57 126 IPR000504 GO:0003723
Phco7g00859 435 FunFam Nucleolysin TIAR-like protein 140 238 - -
Phco7g00859 435 SUPERFAMILY RNA-binding domain, RBD 41 134 IPR035979 GO:0003676
Phco7g00859 435 CDD RRM2_PUB1 140 219 - -
Phco7g00859 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 330 IPR000504 GO:0003723
Phco7g00859 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 213 IPR000504 GO:0003723
Phco7g00859 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 58 124 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00859 Phco-Chr7 6807126 6814143 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00859 7 6807126 6814143 Phco7g00859 7 6807126 6814143 ECH