Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1085 ATGATTCAACTTCACAGAACCTTCTTCTCCACCACCACCTCCTCCGTTCCTTCCTCATACCCTCTCTCTCTTGGCCACTTCATGTTGCAGTTCAGGGCGCTCCAGGCTCCACCAATTGCTCTCGCGCCGCACGCCACGTCATCCCTCATCGGCGCCACCGTCCAATGCCGAACGCGTCTTCTCTTCCCTCGAAGGGTTACCGCGAAATGCCACGCGACGTCGTTTAGCAATTTCCGTTTCCCGTTTGCTTTGAACTCCACGACGTCGTTTGGGGGCAGCGTTTTCTCGAGGGGGTTTGCGACGCGCGCGGCGGAGAACGGTAAGCAGAAGAAACGGGCGAGGGCTGCTGTCGTTCGCGGAAAGGAGAAGGACGAAGGTGTGATAAATGACGCCGCGCCGAAAGAGTTTGACAATGTGACCGCTTCTGAGGGAAGTTTGGGTGAGAAGAAGAAGAATAAGAAGGGATCGTCACCCGTCGCCGCTAGTGGCAAAGAAGATGAGAAGAGTGTGAAGAAGAAAACGGCGAAGAAGAAGACCACGACGACTTTGCGGAGCAAGAAGGTGGCTGCCAGCAGCACCCAAGAGGATGGTGCTGCTGAAGCTTCTAAAAAATCTTACAAAGGGAAGAAGAAGAAGGATTCGAAGAAGAGTTTGACCGAGAGTGCTATTGAAGAAATGCCGGAGAATTCTGCTTCTGCAAAGGACGAGTTGAAGAAGAAAAATGGGAATTCTAGTGTGATTGAAGAGGTGAAACCCCCATGGAATTTTACGTACAAGCCATTGTATCCTCCCACTAGAAAGTCTGTGGTGGTTGTGGAGTCTGTTACAAAGGCGAAGGTTATTAAGAGATACCTTGGTGATATGTATGAAGTCTTGCCAAGCTATGGTCATGTGAGAGACTTGGCTGCAAGGTCTGGATCAGTGAGACCTGATGATGATTTTAGTATGGTGTGGGAGGTTCCGCCGCCTGCCTGGACTCATTTGAAGAGCATCAAGGTTGCACTGAGCAGAGCAGAAAACCTTATTCTTGCATCGGATCCAGATCGTGAGGGAGAAGCTATTGCTTGGCACATCATTGAGATGTTACAACAACAGGGTGCTCTACACGATAATATTTCCTTAGCAAGAGTAGTCTTTCACGAAATAACTGAAAAATCCATAAAAGGTGCCCTACAAACACCACGAGAGATTGACGTAAATTTGGTTCAAGCTTACCTTGCTCGGCGGGCTCTTGATTACTTGATTGGGTTTAACATTTCACCATTACTATGGAGGAAGTTACCAGGTTGCCAATCAGCTGGAAGAGTTCAATCTGCTGCACTTTCTCTTATATGTGATAGAGAAATGGAAATTGATGAATTTAAACCGAAGGAGTATTGGACTGTGGAGGTTCAAATGAAAAAGAAAGAGCTGAGATCAAACAAGAACCTTACTTTTCCTGCTCACTTGACCCATTTTGATTCAAAAAAGTTGAATAAGTTTTCAATTACTTCTGATACCGAGGCAAGAGATATTCGAAGCAATATAAACTCAGCTGATTTTCATGTTGTTAGCTTGAAAAAAAACAAAAGTCGAAGAAATCCTCCAACACCTTATATAACATCGACACTTCAGCAAGATGCTGCAAACAAGTTGCATTTCACTGCAAGTCACACAATGAAGCTTGCACAGAAGCTCTACGAGGGAGTTGAACTGTCTGACAGTGTAGCAGTGGGTCTGATAACATATATCAGAACTGATGGACTCCATATTTCTGATGAAGCTGTAGCTAGTATACGCTCGCTGATCATTGAAAGGTATGGACAAGATTTTGTCTCACAAAGTGCACCAAAGTATTATAAAAAGGTGAAAAATGCACAAGAGGCCCATGAAGCCATTAGACCAACTGACATACGCAAGTTGCCATCAATGCTTTCTGCGATACTTGATGAAGAATCCTTGAAGCTCTACACACTTATTTGGTCACGAACAGTTTCATGTCAAATGGAACCTGCTGTCTTTGAGCAGATACAACTTGATATTGGAAATCTTGATGAGTCTATTATATTACAGTCTTCCATCTCAAGGGTTGAGTTTCCTGGATATCGAGCAGTTTTTACGGACATTGTTAGTGAAGCTGTTCAAGATAAAGGCAGTGATGAATCCAGCCATGATCAAACATTTGGAGTACTAAATTCCTTGAAGACAGGGGATTCATTACACGTGGTTCAAACTGAACCTAATCAGCACCATACACAGCCGCCACCACGGTACTCTGAAGCATCATTGGTTAAGAAGCTTGAGGAGCTTGGGATTGGAAGGCCATCAACATATGCATCCACGATAAAAGTTTTGCAGGATAGAAACTATGTGACAGTAAAAAGTCGAGTTCTGTCTCCAGAATTTCGTGGTCGCATGGTTTCAGCTTTTCTGTCGAACCATTTTTCAGAGGTCACGGACTACAGTTTTACTGCCGATATGGAAACCGAGCTTGATAATGTTTCTGCTGGATTAACTGAATGGAAAGGCCTCCTTAGAGACTATTGGACACGATTTAAATCATATTGTGAGCGTACTTCCAATGTTCATATTCATCAGGTAGAGAAGATGTTGGAAAAGAAATTTGGCGATTATTTATTTGCTTCTCTCCCAGATCAGAGTCGGGTGTGTCCAAGCTGTATGGAAGGCACACTTATTTTTAAAGTAAGTAGATTTGGTGCTGGGTACTTTATAGGCTGTGATCAACATCCGAGGTGCAAGTACATTGCTAAAACATTATATGGTACCGAGGAGGAAGAGGATGCATCTCAGCCAAACACTAGAATAGAGGAACCAAAACTCCTTGGTGTTACCAGTGGTTCAAATGAAAAGGTTCTTTTGAAAAGTGGTCCTTACGGAGTCTATGTTCAGCTCGGAGAAGATAGGAAGGGATACATACCTAGAAGAGCTTCTGTCTCTCATATCAAGGATGTGGATTCTATCACTCTTAAAGATGCACTTGAGGTGCTACAATACCCATTGACATTGGGTAACCATCCTAAGGATGGACAGCCTGTCATATTAAGGCTTGCAAGAGCTGGGTTTTGTGTTAGACATCGGCGAACAATTGCTTCTATTCCTAAGAATGTGAAGCCAAGTGATGTCACCCTGGAAAAAGCCCTTGAATATTTATCTGGTGATGATGTGAGACGATCTGGTCGTCCAAAAAAAGGCAAATCTAAAGTTGAAGTTGAAGTTATTGAAGCGTTTTAA 3231 0.4379 MIQLHRTFFSTTTSSVPSSYPLSLGHFMLQFRALQAPPIALAPHATSSLIGATVQCRTRLLFPRRVTAKCHATSFSNFRFPFALNSTTSFGGSVFSRGFATRAAENGKQKKRARAAVVRGKEKDEGVINDAAPKEFDNVTASEGSLGEKKKNKKGSSPVAASGKEDEKSVKKKTAKKKTTTTLRSKKVAASSTQEDGAAEASKKSYKGKKKKDSKKSLTESAIEEMPENSASAKDELKKKNGNSSVIEEVKPPWNFTYKPLYPPTRKSVVVVESVTKAKVIKRYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPPPAWTHLKSIKVALSRAENLILASDPDREGEAIAWHIIEMLQQQGALHDNISLARVVFHEITEKSIKGALQTPREIDVNLVQAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPKEYWTVEVQMKKKELRSNKNLTFPAHLTHFDSKKLNKFSITSDTEARDIRSNINSADFHVVSLKKNKSRRNPPTPYITSTLQQDAANKLHFTASHTMKLAQKLYEGVELSDSVAVGLITYIRTDGLHISDEAVASIRSLIIERYGQDFVSQSAPKYYKKVKNAQEAHEAIRPTDIRKLPSMLSAILDEESLKLYTLIWSRTVSCQMEPAVFEQIQLDIGNLDESIILQSSISRVEFPGYRAVFTDIVSEAVQDKGSDESSHDQTFGVLNSLKTGDSLHVVQTEPNQHHTQPPPRYSEASLVKKLEELGIGRPSTYASTIKVLQDRNYVTVKSRVLSPEFRGRMVSAFLSNHFSEVTDYSFTADMETELDNVSAGLTEWKGLLRDYWTRFKSYCERTSNVHIHQVEKMLEKKFGDYLFASLPDQSRVCPSCMEGTLIFKVSRFGAGYFIGCDQHPRCKYIAKTLYGTEEEEDASQPNTRIEEPKLLGVTSGSNEKVLLKSGPYGVYVQLGEDRKGYIPRRASVSHIKDVDSITLKDALEVLQYPLTLGNHPKDGQPVILRLARAGFCVRHRRTIASIPKNVKPSDVTLEKALEYLSGDDVRRSGRPKKGKSKVEVEVIEAF* 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1085 1076 CDD TOP1Ac 400 848 IPR013497 GO:0003677|GO:0003916|GO:0006265
Gso14g1085 1076 Gene3D - 264 403 - -
Gso14g1085 1076 ProSiteProfiles Toprim domain profile. 267 382 IPR006171 -
Gso14g1085 1076 SUPERFAMILY Prokaryotic type I DNA topoisomerase 267 890 IPR023405 -
Gso14g1085 1076 SMART topIaneu2 520 801 IPR003602 GO:0003677|GO:0003916|GO:0006265
Gso14g1085 1076 Hamap DNA topoisomerase 1 [topA]. 267 1026 IPR028612 GO:0003677|GO:0003916|GO:0006265
Gso14g1085 1076 Pfam DNA topoisomerase 396 837 IPR013497 GO:0003677|GO:0003916|GO:0006265
Gso14g1085 1076 TIGRFAM topA_bact: DNA topoisomerase I 270 916 IPR005733 GO:0003677|GO:0003917|GO:0006265
Gso14g1085 1076 Pfam Topoisomerase DNA binding C4 zinc finger 881 917 IPR013498 GO:0003677|GO:0003916|GO:0005694|GO:0006265
Gso14g1085 1076 SMART topIban2 373 461 IPR003601 GO:0003677|GO:0003916|GO:0006265
Gso14g1085 1076 MobiDBLite consensus disorder prediction 144 173 - -
Gso14g1085 1076 MobiDBLite consensus disorder prediction 200 222 - -
Gso14g1085 1076 Gene3D Topoisomerase I, domain 3 453 748 IPR013825 -
Gso14g1085 1076 MobiDBLite consensus disorder prediction 104 131 - -
Gso14g1085 1076 SMART toprim5 267 367 IPR006171 -
Gso14g1085 1076 MobiDBLite consensus disorder prediction 229 244 - -
Gso14g1085 1076 MobiDBLite consensus disorder prediction 104 244 - -
Gso14g1085 1076 PANTHER DNA TOPOISOMERASE, TYPE IA, CORE 120 1069 IPR000380 GO:0003677|GO:0003917|GO:0006265
Gso14g1085 1076 CDD TOPRIM_TopoIA_TopoI 267 394 IPR034149 -
Gso14g1085 1076 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 557 580 IPR023406 GO:0003917
Gso14g1085 1076 Gene3D Bacterial Topoisomerase I, domain 1 874 925 - -
Gso14g1085 1076 Pfam Toprim domain 269 382 IPR006171 -
Gso14g1085 1076 Gene3D Topoisomerase I, domain 2 407 842 IPR013824 -
Gso14g1085 1076 MobiDBLite consensus disorder prediction 184 199 - -
Gso14g1085 1076 Pfam Topoisomerase C-terminal repeat 1005 1051 IPR025589 -
Gso14g1085 1076 Pfam Topoisomerase C-terminal repeat 947 1001 IPR025589 -
Gso14g1085 1076 PRINTS Prokaryotic DNA topoisomerase I signature 341 354 IPR013497 GO:0003677|GO:0003916|GO:0006265
Gso14g1085 1076 PRINTS Prokaryotic DNA topoisomerase I signature 431 449 IPR013497 GO:0003677|GO:0003916|GO:0006265
Gso14g1085 1076 PRINTS Prokaryotic DNA topoisomerase I signature 571 580 IPR013497 GO:0003677|GO:0003916|GO:0006265
Gso14g1085 1076 PRINTS Prokaryotic DNA topoisomerase I signature 649 665 IPR013497 GO:0003677|GO:0003916|GO:0006265
Gso14g1085 1076 PRINTS Prokaryotic DNA topoisomerase I signature 764 778 IPR013497 GO:0003677|GO:0003916|GO:0006265
Gso14g1085 1076 PANTHER BNAA01G05990D PROTEIN 120 1069 - -
Gso14g1085 1076 Gene3D Topoisomerase I, domain 4 528 664 IPR013826 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1085 Gso-Chr14 19452763 19491612 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1085 - - gmx:100778913 2040.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1085 14 19452763 19491612 Gso14g1085 14 19452763 19491612 ECH