Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g1616 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1617 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto8g2355 . . . . . . . . . . . . . . . . . .
Vvi18g1618 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1619 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car06g02967 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1620 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car06g02966 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1621 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car04g01048 . . . . . . . . . . . Gma10g02078 Gma20g01637 . . Gso10g1947 Gso10g1947 . . Lal13g0100 . . . . . Lan20g0116 . . . . . . . . . . . . . . . . . Lja5g0815 . Mal1g2912 . . . . . . . Mtr1g3553 . . . . . . . Psa6g4266 . . . . . . . . . . . . . . . . . . . . Sto8g2357 Tpr1g0942 . . . Tsu01g04210 . . . . . . . . . . . . .
Vvi18g1622 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1623 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1624 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1625 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Sto Sto8g2357 Chr8 15939028 15945670 +
Vvi Vvi18g1616 Chr18 20741429 20743451 +
Vvi Vvi18g1617 Chr18 20756070 20776002 -
Sto Sto8g2355 Chr8 15899042 15908745 -
Vvi Vvi18g1618 Chr18 20804758 20807442 +
Vvi Vvi18g1619 Chr18 20836469 20839477 +
Car Car06g02967 Chr06 50004294 50008745 -
Vvi Vvi18g1620 Chr18 20840022 20865341 -
Car Car06g02966 Chr06 49997244 50009085 +
Vvi Vvi18g1621 Chr18 20935211 20941972 -
Car Car04g01048 Chr04 10640282 10648442 +
Gma Gma10g02078 Chr10 48311571 48318818 +
Gma Gma20g01637 Chr20 43458304 43466036 -
Gso Gso10g1947 Chr10 46439615 46446899 +
Gso Gso10g1947 Chr10 46439615 46446899 +
Lal Lal13g0100 Chr13 633711 639918 -
Lan Lan20g0116 Chr20 695189 701006 -
Lja Lja5g0815 Chr5 7720992 7727521 -
Mal Mal1g2912 Chr1 41643645 41651485 +
Mtr Mtr1g3553 Chr1 47173284 47180665 +
Psa Psa6g4266 Chr6 378048092 378054915 -
Sto Sto8g2357 Chr8 15939028 15945670 +
Tpr Tpr1g0942 Chr1 8107402 8115097 -
Tsu Tsu01g04210 Chr01 49966607 49974884 +
Vvi Vvi18g1622 Chr18 20963648 20971296 -
Vvi Vvi18g1623 Chr18 20989369 20993698 -
Vvi Vvi18g1624 Chr18 21049545 21050534 -
Vvi Vvi18g1625 Chr18 21094503 21094793 +